Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F002073175.1_202017-03-28] 340 sequences; 36,794,057 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq14 98.7 5e-16 >seq14 Length=753269 Score = 98.7 bits (108), Expect = 5e-16 Identities = 183/269 (68%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 25889 TTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGA 25948 ||||| ||||| ||| ||| ||| | || ||| || || ||| || |||||||| Sbjct 131087 TTTGGGCAGAACAAACTCCATTCACCGTTCGCCTCCACACGCTTCATGAACAAATCTGGG 131146 Query 25949 ATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTT 26008 ||||||| | ||||| | || | || | || || ||||| ||||| || Sbjct 131147 ATCCACAACCCGTAAAAGAGGTCACGAGCACGATGGAGCTCATTACCGTGGTTCTTCTTC 131206 Query 26009 AGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCT 26068 | || ||||| || || || || | ||||||||| || || ||||| || || ||| Sbjct 131207 AAGTCCAAGAACTCGAAGATGTCCGCGTGCCATGGCTCCAAGTAGATGGCGAACGAACCC 131266 Query 26069 TTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATT 26128 || | || ||||| || || || ||||| | || || || ||||| || ||||||| Sbjct 131267 TTGCGCTTGCCTCCGCCCTGGTCAACGTAGCGAGCCGTGTCGTTGAACACACGCAACATT 131326 Query 26129 GGAACTAATCCAGTTGAAAATCCGTTTGT 26157 ||||| | ||| | || ||||||| || Sbjct 131327 GGAACGAGACCATTCGACGATCCGTTCGT 131355 Score = 95.1 bits (104), Expect = 6e-15 Identities = 179/269 (67%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 25889 TTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGA 25948 || || ||||| ||| ||| || | || || || || ||| || |||||||| Sbjct 124089 TTYGGGCAGAACAAACTCCAKTCRCCGTTCGMYTCCACACGCTTCATGAACAAATCTGGG 124030 Query 25949 ATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTT 26008 ||||||| | || || | || | || | || || ||||| ||||| || Sbjct 124029 ATCCACAACSCGTARAAKARRTCACGAGCACGRTGGAGCTCATTACCGTGGTTCTTCTTC 123970 Query 26009 AGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCT 26068 | || ||||| || || || || | ||||||||| || || ||||| || || ||| Sbjct 123969 AAGTCCAAGAACTCGAAGATGTCCGCGTGCCATGGCTCCAAGTAGATGGCGAACGAACCC 123910 Query 26069 TTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATT 26128 || | || ||||| || || || ||||| | || || || ||||| || ||||||| Sbjct 123909 TTGCGCTTGCCTCCGCCCTGGTCAACGTAGCGAGCCGTGTCGTTGAACACACGCAACATT 123850 Query 26129 GGAACTAATCCAGTTGAAAATCCGTTTGT 26157 ||||| | ||| | || ||||||| || Sbjct 123849 GGAACGAGACCATTCGACGATCCGTTCGT 123821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253038951465500