Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F002073175.1_202017-03-28] 340 sequences; 36,794,057 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq25 129 2e-24 seq291 109 2e-18 seq69 96.9 1e-14 seq91 95.1 4e-14 >seq25 Length=728326 Score = 129 bits (142), Expect = 2e-24 Identities = 208/296 (70%), Gaps = 10/296 (3%) Strand=Plus/Plus Query 302553 ATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGT 302612 |||||||| | |||| | ||||| ||| | || ||||||||||| |||||||| Sbjct 79075 ATCATAACGAGTCATGACCGACTCCATGGCCTTCACCAATCGACGCTGAATGTAACCAGT 79134 Query 302613 TGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAA 302672 | | ||| || || |||||||| || | ||| |||||||||||||||| |||||||| Sbjct 79135 TTCGGCTGTCTTGACGGCTGTATCGATCAAACCTTCACGACCACCCATAGCGTGGAAGAA 79194 Query 302673 TAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG 302732 | |||| || ||| ||| | | ||| | || |||||||| || || || Sbjct 79195 GAATTCTTGAGGCGTTAGACCCTTCAAGTACGAGTTTTCGACGAAACCTCGACTTTCAGG 79254 Query 302733 ---CGAATCGTCGAACTTG--GTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGG 302787 | |||| || |||| |||| |||||||| || | | | ||||| || Sbjct 79255 ACCCAAATCATC---CTTGCCGTAA--TGTGGCAGTGTTCGACGGTTGAAACCGTACGGA 79309 Query 302788 ATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 |||||||| || || ||||||||||| |||| |||| ||| ||||||||||| || Sbjct 79310 ATACGCTTGCCTTCGACGTTCTGCTGACCCACACACGCAATAATCTGCGAAATGTT 79365 >seq291 Length=245102 Score = 109 bits (120), Expect = 2e-18 Identities = 173/248 (70%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 251413 CCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTG 251472 ||||| | | ||| || || || | ||| ||||| || | | | || ||| || || Sbjct 30753 CCACAGATGTCACAGACGTGCACACGGTAGGCATCCGAGTTGGCGAACAGTCGATCCATG 30812 Query 251473 GTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGA 251532 |||| | | |||||| ||||||| |||||||||||||| ||||| | ||| | | Sbjct 30813 AGGAAGTTCGCCGAACCGTGAGAAATCAAGCAATCACGCTCCATCTCACCCATACGCAAA 30872 Query 251533 CCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATG 251592 ||||| || ||||| | ||| || ||||||||| || || | || ||||| Sbjct 30873 CCACCTTCACGAGCACGACCTTCCATAGGCTGACGGGTAAGCATCGTCACTGGACCACGC 30932 Query 251593 GAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCG 251652 || || || ||| || | ||||||||||| | |||||||||||| | |||||| Sbjct 30933 GAACGCGAGTGGATCTTGTCGTCGACCATATGCTTCAAACGCTGGTAGAAAGTAGGACCG 30992 Query 251653 ATGAAGAT 251660 |||||||| Sbjct 30993 ATGAAGAT 31000 >seq69 Length=689117 Score = 96.9 bits (106), Expect = 1e-14 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 354007 ATTGCTGTGGCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTCAAGG 354066 || || ||||| ||||| || |||||||||||||| | | | ||||||||||| || || Sbjct 382715 ATGGCAGTGGCAAGAGCTCCGAGCGAGTCACGGTCCAAGTAGTTAGTAGGTTCATCGAGC 382774 Query 354067 ATAAGAACGTGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTGTCCG 354126 | ||||| ||| || | | |||||| || ||| ||| || ||||| |||||||| || Sbjct 382775 ACAAGAATGTGAGGGTTGAGCCACATGGCGGCACCCAACACAACCTTCACCTTCTGACCA 382834 Query 354127 CCTGATAG 354134 || || || Sbjct 382835 CCCGAAAG 382842 >seq91 Length=645019 Score = 95.1 bits (104), Expect = 4e-14 Identities = 127/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 60169 GTCCTTGCCACCCATAAGACGGGTTCCAAATTGTCCGTTTGGCTGGAATAGATTAATGTT 60228 ||||||||| ||||| | || || || || || ||||||||| || | ||| ||||| Sbjct 327762 GTCCTTGCCTCCCATCAATCGCGTACCGAACTGACCGTTTGGCGAGAGCAAATTGATGTT 327703 Query 60229 GTTAGAGCCTACGAAATTTTGAGCGAGACCAACAATAGCACCATTTAAACTGGCTTCACC 60288 ||| ||| ||||| | ||| || | ||||| | ||| | || ||| || ||||| Sbjct 327702 GTTGCTGCCCACGAAGTCTTGCGCCATGTTGACAATTGTACCGTATATACTTGCCTCACC 327643 Query 60289 GTGATGATATCCAGAATGTTCTGAAACATATCCACTGAATTGTGCGACTTTAATTTC 60345 |||||| || | ||||| || || || ||||| | | ||| ||||| || ||||| Sbjct 327642 GTGATGGTAAGCCGAATGCTCCGAGACGTATCCTCCAAGTTGGGCGACCTTGATTTC 327586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471811188394580