Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F002073175.1_202017-03-28] 340 sequences; 36,794,057 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq235 109 1e-18 seq296 105 1e-17 >seq235 Length=453453 Score = 109 bits (120), Expect = 1e-18 Identities = 121/159 (76%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 ||||| || || || || ||||||||||| | || || ||||||||||| || |||||| Sbjct 11176 CCGTCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGATCTGGAGGAATGCCTTCC 11235 Query 82713 TTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGT 82771 || || || ||||| ||| || || || ||||||| || ||| || || ||||| || Sbjct 11236 TTGTCCTGGATCTTCTGC-TTGACGTTGTCAATCGAGTCCGAAGGCTCGACGTCCAACGT 11294 Query 82772 TATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || |||||||| || | ||||| || || |||||||| Sbjct 11295 AATGGTCTTGCCGGTGAGTGTCTTGACGAAGATCTGCAT 11333 Score = 84.2 bits (92), Expect = 4e-11 Identities = 94/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 82689 TGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGT 82747 || ||||||||||| || || ||||| || || ||||| ||||| || || ||||||| Sbjct 29424 TGCTGATCTGGAGGAATACCCTCCTTGTCCTGGATCTTCTGCTTC-ACGTTGTCAATCGA 29366 Query 82748 ATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTG 82807 || ||| || || || | || ||||||||||| ||||| ||||| || || ||||| Sbjct 29365 GTCCGAAGGCTCGACGTCAAGCGTGATCGTCTTGCCGGTCAATGTCTTCACGAAGATCTG 29306 Query 82808 CAT 82810 ||| Sbjct 29305 CAT 29303 >seq296 Length=213998 Score = 105 bits (116), Expect = 1e-17 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || ||||||| || || || ||||| || || || || || || | | || Sbjct 98313 ACGGAGCACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCC 98372 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||| || || || || || || ||||| || | || || ||||| || ||||||||||| Sbjct 98373 GTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGAATTCCTTCCTT 98432 Query 82715 ATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTA 82773 || || ||||| ||| || || || ||||| | || || || || || | || | Sbjct 98433 GTCCTGGATCTTCTGC-TTGACGTTGTCAATGCTGTCCGATGGCTCGACATCGAGCGTGA 98491 Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||||||| |||| ||||| ||||| |||||||| Sbjct 98492 TGGTCTTGCCCGTCAGAGTCTTCACAAAGATCTGCAT 98528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981822922915260