Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F002073175.1_202017-03-28] 340 sequences; 36,794,057 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq125 183 7e-41 seq270 178 3e-39 >seq125 Length=645450 Score = 183 bits (202), Expect = 7e-41 Identities = 408/610 (67%), Gaps = 4/610 (1%) Strand=Plus/Minus Query 121040 AGATTGTCACCATTGAATCCAGAATACGGAATGAAAGGAATTTTCTTGGGCTTCATACCA 121099 || |||||||| ||||| || || || || |||| || | ||||| ||||| | |||| Sbjct 514270 AGGTTGTCACCGTTGAAGCCCGAGTATGGGATGACTGGSACCTTCTTTGGCTTGAAACCA 514211 Query 121100 A-CTTGTTGAAGCATTGAGCTCATTTCTGTCTTAATCTCGTCAAAGCGTGTCTGAGACCA 121158 | || | | || ||| | | ||| ||| || |||| | || |||| ||||| Sbjct 514210 ATCTGGGTCAA-CATCTTGACGAATTCGTCCTTGATTTCGTTGTAACGGGTCTCCGACCA 514152 Query 121159 ATCACATGAATCCATCTTGTTGATTCCAACAATAACTTTCTCAATACCCAAAAGAGCAAG 121218 || || || |||||||||||||| || || || | | ||||||||||||||| || Sbjct 514151 GTCGCACGAGTCCATCTTGTTGATACCGACGATGATCTGCTCAATACCCAAAAGGAAGAG 514092 Query 121219 AATACGTGCGTGAAAACGTGTTTGACCTTGTGGGATTCCAGCAGAACGATCGCCTTTCGC 121278 | ||| ||||| ||| || ||||| | | || | | ||| | || || Sbjct 514091 GAGACGAGCGTGCTGACGGGTCTGACCCTCATCAACACCCATCTTAGGGTCGGCCTTGGC 514032 Query 121279 AATAGCAGATTCAAAACCAtttttttCAGCAGGAATAAGAATAAAAGCAGCATCGGCTT- 121337 || |||| || |||||| || || || || | ||| || | | |||| ||||| Sbjct 514031 RATGGCAGCCTCGAAACCACCCTTCTCGGCTGGCACAAGGATRAGACCAGCGTCGGCRCA 513972 Query 121338 GTCCGACGCCTGAAATCATATTCTTAATAAAGTCAATATGGCCTGGTGCATCAATAATAG 121397 | |||| || | |||||| ||||| || |||| | || ||||| || || | || | Sbjct 513971 GCCCGAA-CCGGTAATCATGTTCTTGATGTAGTCCTTGTGACCTGGCGCRTCCACRATGG 513913 Query 121398 AATAATGATAAGAATCTGTGTAAAATTCCTTAGTATTACAATTTACTGTAATTCCGCGCT 121457 || || || || ||| | || ||||| || ||||| || | || | || |||| Sbjct 513912 TGTAGTGGTAGTTGTCGGTGAAGAACTCCTTGGTGTTACACTTGATGGTCACACCACGCT 513853 Query 121458 CACGCTCTTCCTTGTTGTTATCCATGTAATAAGCAAATGCAAAACTAGATTTGCCGTTTG 121517 |||||||||||||| | |||||||| || || || || || || ||||| || | Sbjct 513852 CACGCTCTTCCTTGCACGTGTCCATGTAGTACGCGAAGGCGAACGACGACTTGCCCTTGG 513793 Query 121518 CGTCGGCAAGTTCCTGCAACTTCGCCATCTCACGAGCATTTATGCCTCCCAATTTAAAGA 121577 | || || |||| | ||| ||||||||||| || || || || | || |||| Sbjct 513792 CATCAGCCTCGGCCTGGAGCTTGGCCATCTCACGCTCACCGATACCGCCGAGCTTGAAGA 513733 Query 121578 TAAGATGACCGGTTGTTGTTGACTTTCCCGAGTCAACTTCACCACAGACCACCAAAGATA 121637 | | ||||| || || || ||||| || | || || | ||| || |||||||| || | Sbjct 513732 TCAAGTGACCAGTGGTGGTCGACTTGCCGGCATCGACGTGACCGCACACCACCAACGACA 513673 Query 121638 TATGTTGCTT 121647 || ||||| Sbjct 513672 AGTGCTGCTT 513663 >seq270 Length=400742 Score = 178 bits (196), Expect = 3e-39 Identities = 407/610 (67%), Gaps = 4/610 (1%) Strand=Plus/Minus Query 121040 AGATTGTCACCATTGAATCCAGAATACGGAATGAAAGGAATTTTCTTGGGCTTCATACCA 121099 || |||||||| ||||| || || || || |||| || | ||||| ||||| | |||| Sbjct 352187 AGGTTGTCACCGTTGAAGCCCGAGTATGGGATGACTGGSACCTTCTTTGGCTTGAAACCA 352128 Query 121100 A-CTTGTTGAAGCATTGAGCTCATTTCTGTCTTAATCTCGTCAAAGCGTGTCTGAGACCA 121158 | || | | || ||| | | ||| ||| || |||| | || |||| ||||| Sbjct 352127 ATCTGGGTCAA-CATCTTGACGAATTCGTCCTTGATTTCGTTGTAACGGGTCTCCGACCA 352069 Query 121159 ATCACATGAATCCATCTTGTTGATTCCAACAATAACTTTCTCAATACCCAAAAGAGCAAG 121218 || || || |||||||||||||| || || || | | ||||||||||||||| || Sbjct 352068 GTCGCACGAGTCCATCTTGTTGATACCGACGATGATCTGCTCAATACCCAAAAGGAAGAG 352009 Query 121219 AATACGTGCGTGAAAACGTGTTTGACCTTGTGGGATTCCAGCAGAACGATCGCCTTTCGC 121278 | ||| ||||| ||| || ||||| | | || | | ||| | || || Sbjct 352008 GAGACGAGCGTGCTGACGGGTCTGACCCTCATCAACACCCATCTTAGGGTCGGCCTTGGC 351949 Query 121279 AATAGCAGATTCAAAACCAtttttttCAGCAGGAATAAGAATAAAAGCAGCATCGGCTT- 121337 || |||| || |||||| || || || || | ||| || | | |||| ||||| Sbjct 351948 RATGGCAGCCTCGAAACCACCCTTCTCGGCTGGCACAAGGATRAGACCAGCGTCGGCRCA 351889 Query 121338 GTCCGACGCCTGAAATCATATTCTTAATAAAGTCAATATGGCCTGGTGCATCAATAATAG 121397 | |||| || | |||||| ||||| || |||| | || ||||| || || | || | Sbjct 351888 GCCCGAA-CCGGTAATCATGTTCTTGATGTAGTCCTTGTGACCTGGCGCRTCCACRATGG 351830 Query 121398 AATAATGATAAGAATCTGTGTAAAATTCCTTAGTATTACAATTTACTGTAATTCCGCGCT 121457 || || || || ||| | || ||||| || ||||| || | || | || |||| Sbjct 351829 TGTAGTGGTAGTTGTCGGTGAAGAACTCCTTGGTGTTACACTTGATGGTCACACCACGCT 351770 Query 121458 CACGCTCTTCCTTGTTGTTATCCATGTAATAAGCAAATGCAAAACTAGATTTGCCGTTTG 121517 |||||||||||||| | |||||||| || || || || || || ||||| || | Sbjct 351769 CACGCTCTTCCTTGCACGTGTCCATGTAGTACGCGAAGGCGAACGACGACTTGCCCTTGG 351710 Query 121518 CGTCGGCAAGTTCCTGCAACTTCGCCATCTCACGAGCATTTATGCCTCCCAATTTAAAGA 121577 | || || |||| | ||| ||||||||||| | || || || | || |||| Sbjct 351709 CATCAGCCTCAGCCTGGAGCTTGGCCATCTCACGCTCGCCGATACCGCCGAGCTTGAAGA 351650 Query 121578 TAAGATGACCGGTTGTTGTTGACTTTCCCGAGTCAACTTCACCACAGACCACCAAAGATA 121637 | || || ||||| || || ||||| || | || || | || ||||| ||||| || | Sbjct 351649 TGAGGTGGCCGGTCGTGGTCGACTTACCGGCATCGACGTGGCCGCAGACGACCAACGACA 351590 Query 121638 TATGTTGCTT 121647 || ||||| Sbjct 351589 AGTGCTGCTT 351580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186807629946740