Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F002073175.1_202017-03-28] 340 sequences; 36,794,057 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq14 161 9e-35 >seq14 Length=753269 Score = 161 bits (178), Expect = 9e-35 Identities = 965/1527 (63%), Gaps = 43/1527 (3%) Strand=Plus/Plus Query 146905 AACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGCTCAAAAGACTCA 146964 ||||||||||| |||||||| | | |||| ||| | ||||| ||||||| ||||| Sbjct 130244 AACTCGCCCGCAAGCACACGACGGTTGTACATGTTGGTCGTGAATGGCTCAATCGACTCG 130303 Query 146965 TTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACCAACAATGAATTT 147024 || || || | || || ||||| | || || ||||| ||||| |||||| || || Sbjct 130304 TTGTTRCCGAGGATCTGYGCCGTCGAYGCYGTTGGCATAGGCGCCAACAACAACGAGTTG 130363 Query 147025 CGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCACAT---CGACGAG 147081 |||| ||||| | | | | ||||||| | | |||||||||||| |||||| Sbjct 130364 CGCACACCGTGCTCCATCACCTGAGCCTTCAACGCGTTCCAGTCCCACATGCCCGACGAT 130423 Query 147082 GGCGTCACGTTCCACATGTCGTACTGGA----GCAC-TCCTCGACTGGCGGGACTGCCAG 147136 |||||||| ||||||||| |||||| || | | ||| ||||| | ||||| Sbjct 130424 GGCGTCACACCCCACATGTCRAACTGGAAGATGCCCTTGCTC-ACTGGYG----AGCCAG 130478 Query 147137 CGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGC-TTGCCTCGAGCGCTCCA 147195 | ||||| ||| || | || || || || || | ||||| | ||| ||| Sbjct 130479 CRAACGTCTCGTATGGACCRTKSACCTYAGCYAACTC-CATCGACGCCTCCATCGCACCA 130537 Query 147196 TAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCGTAAGGC 147255 |||| | || ||| ||| || ||||| | || || || || || ||| || || Sbjct 130538 AAGTACAGCGTCTCGAAGATGTGCTTGTTCAACTCGCGAGCCTCGTCACTTTCG-AACGC 130596 Query 147256 ATA-CGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGTCGATG 147314 || || || | || | |||||| | |||||| | ||||| || ||||| || || Sbjct 130597 GTAGTTCATCAGGATGAACGTATCGGCGAGACCCTGCACACCGATACCAATAGGACGGTG 130656 Query 147315 CTTTTCGTTGCTGCGCTTCGCGCTC-GCTATGGGATAGTGGTTGCGATCAATAATCTTGT 147373 |||||| ||| || ||| | || || |||| |||| || || | ||||| Sbjct 130657 GCGCATGTTGCTCTTCTTGGC-CTCTGGAATCGGGTAGTAGTTGATGTCGATGACCTTGT 130715 Query 147374 TGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAGTCCCGT 147433 | ||||| | || ||| | || | | ||| |||||||||||||| | |||| Sbjct 130716 TCAGGTTCTTCGTCACTTGTTTGGCTACCTTGTAGAGCTTCTCGAAATCATACTTGCCGT 130775 Query 147434 CTTC-GACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCT 147492 | || |||| | | | ||| | |||||| ||||| || ||||| || || ||| Sbjct 130776 CCTCACTCACGAA--CTTCGGT--AGGGCGATCGACGCAAGGTTGCACACAGCGACCTCA 130831 Query 147493 TCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAA 147552 || | || |||||| | | || ||||| |||||| | || || | Sbjct 130832 TCCGAATCTGTGTACTCGATCACCTCACAGCACAAGTTGCTCGAGCGGATCGTACCGAGG 130891 Query 147553 TTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTC 147612 || ||||| || || ||||| ||| || ||| | ||||| ||||| || ||| Sbjct 130892 TTCTGCTGGTTCGACTTGCGATTCGCCGCATCCTTGTACAGCATATACGGCGTACCCGTC 130951 Query 147613 TCGACTTGCGTTTCAACGAT---AAACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGA 147669 |||| || | || | ||| |||| || | ||| || || | || ||| Sbjct 130952 TCGATCTGTGACTCGAGGATGGCGAACC---AGAGCTGCTGAGCACGGATGGTCTTGCGA 131008 Query 147670 TAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCG 147729 ||||| ||| ||| |||||||| ||| ||||| ||||| |||| ||| Sbjct 131009 GCCTTTCCCTCAGCTTCATACTTGGCGTACAACGTCTCGAACTCCTCGCCCCAGCACTCG 131068 Query 147730 GCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGTTAACGCGT 147789 || || || | | || || | || ||| ||| ||| | || || Sbjct 131069 TAGAGACCTTGAGCTTCGTTTGGGCAGAACAAACTCCATTCACCGTTCGCCTCCACACGC 131128 Query 147790 CGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGAT--CGCGCGCTTTGCAATCCT 147847 ||| |||| ||| || | ||||| | |||| | || | || || | || | || Sbjct 131129 TTCATGAACAAATCTGGGATCCACAACCCGTAAAAGAGGTCACGAGCACGATGGA--GCT 131186 Query 147848 CGGCGCCCATGTTGCGTTTCAAAT-TAAGCACGCTATAGATGTCGGCGTGCCAGGGTTCA 147906 | || ||| ||||| | ||| || | | ||||||| |||||||| || || Sbjct 131187 CATTACCGTGGTTCTTCTTCAAGTCCAAGAACTCGA-AGATGTCCGCGTGCCATGGCTCC 131245 Query 147907 ATGTAGACGGCCAGCGCACCTTTACGCTT---TCCGCCCTGGTCGACATGGCGCACCATG 147963 | ||||| ||| | || ||| || ||||| |||||||||||| || | ||| || || Sbjct 131246 AAGTAGATGGCGAACGAACCCTTGCGCTTGCCTCCGCCCTGGTCAACGTAGCGAGCCGTG 131305 Query 147964 TTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGTGGAATTGATC 148023 | ||| ||||| |||| ||| || | || || ||| | ||||| || || Sbjct 131306 TCGTTGAACACACGCAACATTGGAACGAGACCATTCGACGATCCGTTCGTACCGCGAATG 131365 Query 148024 TTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCCGCCGTACTTTGAT 148083 | ||| ||| || | | ||||| | | || ||||| ||| | |||| || Sbjct 131366 TAACTGTTAGTGGCACGGATGTTGTGCATACTGATACCGATGCCACCGGCCCACTTGGAG 131425 Query 148084 ATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGTCGATGCTGTCGTTTTTGACGCCA 148143 || | ||||| | | || |||||| || || ||| ||| | || | | || Sbjct 131426 ATAGATGCGCAGTTCTTGAGCGTGTCGTAGATACCCTCAATGGAGTCATCCTTCATGGCA 131485 Query 148144 AGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTC 148203 ||||| |||||||| ||| || || |||| |||| |||||| || || Sbjct 131486 AGCAAGAAACACGACGACAACTGAGGGCGTGGCGTACCCGAGTTGAAAAGAGTTGGTGAG 131545 Query 148204 GCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAATAGCGTCTTCGATGTCG 148263 |||| || || || ||| ||| | ||| ||| || ||| | |||| || Sbjct 131546 CCGTGAGTGAAGAAGCCTTGGGACATGTAGTCGTACATCTGAAGAGCACCGGCGATATCT 131605 Query 148264 TCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCG-TTCGGCAACTTG 148322 || ||| ||||| | ||||| | || ||| |||||||| || | | || |||| Sbjct 131606 TCTTTGTGGATGCCGATACACACGCGTAAGATCATCTGCTGTGGACGCTCCATCACCTTG 131665 Query 148323 ATTGTTGATCTTGAGAAGATATCCAT-TTTCGAGGGTTTTGTAACCAAAGTACTTGTAAT 148381 || || || ||||| | || ||| || || ||| | |||||||| | ||| | Sbjct 131666 -CCATTAATGCGGAAGAGATA-CGATCGTTCCAGCGTCTTGAAGCCAAAGTAGTCGTACT 131723 Query 148382 CAAAATCTAGCTCGTAAGCGATGGCCG 148408 ||||||| |||| | |||||||| Sbjct 131724 CAAAATCGCGCTCATGGATGATGGCCG 131750 Score = 125 bits (138), Expect = 7e-24 Identities = 323/487 (66%), Gaps = 19/487 (4%) Strand=Plus/Minus Query 146905 AACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGCTCAAAAGACTCA 146964 ||||||||||| |||||||| | | |||| ||| | ||||| ||||||| ||||| Sbjct 124932 AACTCGCCCGCAAGCACACGACGGTTGTACATGTTGGTCGTGAATGGCTCAATCGACTCG 124873 Query 146965 TTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACCAACAATGAATTT 147024 || || || | || || ||||| | || || ||||| ||||| |||||| || || Sbjct 124872 TTGTTRCCGAGGATCTGYGCCGTCGAYGCYGTTGGCATAGGCGCCAACAACAACGAGTTG 124813 Query 147025 CGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCACAT---CGACGAG 147081 |||| ||||| | | | | ||||||| | | |||||||||||| |||||| Sbjct 124812 CGCACACCGTGCTCCATCACCTGAGCCTTCAACGCGTTCCAGTCCCACATGCCCGACGAT 124753 Query 147082 GGCGTCACGTTCCACATGTCGTACTGGA----GCAC-TCCTCGACTGGCGGGACTGCCAG 147136 |||||||| ||||||||| |||||| || | | ||| ||||| | ||||| Sbjct 124752 GGCGTCACACCCCACATGTCRAACTGGAAGATGCCCTTGCTC-ACTGGYG----AGCCAG 124698 Query 147137 CGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGC-TTGCCTCGAGCGCTCCA 147195 | ||||| ||| || | || || || || || | ||||| | ||| ||| Sbjct 124697 CRAACGTCTCGTATGGACCRTKSACCTYAGCYAACTC-CATCGACGCCTCCATCGCACCA 124639 Query 147196 TAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCGTAAGGC 147255 |||| | || ||| ||| || ||||| | || || || || || ||| || || Sbjct 124638 AAGTACAGCGTCTCGAAGATGTGCTTGTTCAACTCGCGAGCCTCGTCACTTTCG-AACGC 124580 Query 147256 ATA-CGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGTCGATG 147314 || || || | || | |||||| | |||||| | ||||| || ||||| || || Sbjct 124579 GTAGTTCATCAGGATGAACGTATCGGCGAGACCCTGCACACCGAKACCRATAGGACGGTG 124520 Query 147315 CTTTTCGTTGCTGCGCTTCGCGCTC-GCTATGGGATAGTGGTTGCGATCAATAATCTTGT 147373 ||| || ||| || ||| | || || |||| |||| || || | ||||| Sbjct 124519 GCGCATGTTRCTCTTCTTGGC-CTCTGGRATYGGGTAGTAGTTGATGTCGATGACCTTGT 124461 Query 147374 TGAGGTT 147380 | ||||| Sbjct 124460 TCAGGTT 124454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476609174402400