Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F002073175.1_202017-03-28] 340 sequences; 36,794,057 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1 102 1e-16 >seq1 Length=1427593 Score = 102 bits (112), Expect = 1e-16 Identities = 367/566 (65%), Gaps = 15/566 (3%) Strand=Plus/Plus Query 39614 AAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTG 39673 ||||||||||||||||| || || || || || | ||| || | ||||| || || || Sbjct 982075 AAGCAGGCGAAGTCACAGTGGAGACCTTCGTCACGACTGATAAGCTCGTTCGAGAAGCTG 982134 Query 39674 AGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAA 39732 || |||||||| ||||||||||| |||||||| || | | |||| || || || || || Sbjct 982135 AGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGACCG-AGCAGAACGAACCCGAGAA 982193 Query 39733 GAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATG 39792 |||||| || || | || || || || || | | | ||| | || | | || | Sbjct 982194 GAAGATACCCTCAATGGCAGCGAAGGCGAC--GACACGCTCAGCAA-ACGCGGCGTTCTC 982250 Query 39793 T-ATCCACTTC-----TGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTAT 39846 | | ||| | | ||||| | || ||||||| || || || ||||| || || Sbjct 982251 TGAGTCACACCAGCGGAGCGCCCAGTTGGCCTTCTTCTGCACGCATGGGATTGTCTCAAT 982310 Query 39847 AGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACT 39906 || || | | | || || | ||| || | || || || || ||||| Sbjct 982311 GGCGCGGAACAAGTGGTTCTTCTCGGCGGCATCCTTGATGTACGTGTCAATCAACAGCGA 982370 Query 39907 ATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTC 39966 |||||||| | |||||||| ||||| || ||||| || ||||| || || | ||||| Sbjct 982371 GTACATTTCCGGGTGGATGTTCTCAATGGCAATCTGGAAGCCGTAGAAGCAGCGGGCTTC 982430 Query 39967 AGTAATTTGTACCTC--TGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCA 40024 || | || || || || || || | || | || || ||||| || |||||| Sbjct 982431 AGGCACCTGGACTTCGTTGCTGAAGTTCAT--GGCAAGGTTCTCGTTCACAATACCATCA 982488 Query 40025 CTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTA 40084 || || || || || || | || || || || || | |||| | |||| || Sbjct 982489 CTGGCAGCGAAGAACGCGAGCACGTGCTTGATGAAGTGACGCTCATTGTCGGTCATGTTG 982548 Query 40085 TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCT 40144 |||||| |||| || | | ||| | || || | ||||| || || || Sbjct 982549 CCCCAGTCCTTGAGGTCGTGCACAAGATCGATCTCCTCGACCGTCCAGAAGCTGGCTTCC 982608 Query 40145 GCCTTTTTGTACATGTTCCATATATC 40170 ||||| |||||||| | ||| || || Sbjct 982609 GCCTTCTTGTACATATCCCAGATCTC 982634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686905880637600