Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F002073175.1_202017-03-28] 340 sequences; 36,794,057 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq14 251 9e-62 seq1 156 5e-33 >seq14 Length=753269 Score = 251 bits (278), Expect = 9e-62 Identities = 955/1471 (65%), Gaps = 53/1471 (4%) Strand=Plus/Plus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||| ||||| || ||| |||| |||| | || || || || | ||| || || || || Sbjct 130270 GTACATGTTGGTCGTGAATGGCTCAATCGACTCGTTGTTRCCGAGGATCTGYGCCGTCGA 130329 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826 || |||||||| || |||| ||| | ||| || | ||| | |||| | | | | Sbjct 130330 YGCYGTTGGCATAGGCGCCAACAACAACGAGTTGCGCACACCGTGCTCCATCACCTGAGC 130389 Query 110827 CTTGAGAACATCCCAGTCGTAGTTGAGCT----TGGTTTCACCTTCCCACATGTCAAACT 110882 ||| | | | |||||| | || | ||| |||| |||||||||| |||| Sbjct 130390 CTTCAACGCGTTCCAGTCCCACATGCCCGACGATGGCGTCACAC-CCCACATGTCRAACT 130448 Query 110883 G-AAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCA 110941 | ||| |||||| | | || || || | || || || || | ||| | | | | Sbjct 130449 GGAAGATGCCCTTGCT-CACTGGYGAGCCAGCRAACGTCTCGTATGGACCRTKSACCTYA 130507 Query 110942 GCCAATTCACAGCT-CGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATT 111000 || || || || | |||||||| | | |||| || || ||||| | || Sbjct 130508 GCYAACTC-CATCGACGCCTCCATCGCACCAAAGTACAGCGTCTCGAAGATGTGCTTGTT 130566 Query 111001 CATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAG 111060 || ||| || || || || || |||||| || || || ||| ||||| Sbjct 130567 CAACTCGCGAGCCTCGTCACTTTCGAACGCGTAGTTCATCAGGATGAACGTATCGGCGAG 130626 Query 111061 ACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTC-AA 111119 ||| || ||||| | ||||||||| | ||| ||||| || ||| || ||| || Sbjct 130627 ACCCTGCACACCGATACCAATAGGACGGTGGCGCATGTTGCTCTTCTTGGCC-TCTGGAA 130685 Query 111120 CGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTT 111179 || || | || |||| ||||| ||| || || || || || | |||| | | Sbjct 130686 TCGGGTAGTAGTTGATGTCGATGACCTTGTTCAGGTTCTTCGTCACT-TGTTTG-GCTAC 130743 Query 111180 CATGAAGT--TTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGC 111237 | || || || || ||||| | ||| || ||| | || |||| || ||||| Sbjct 130744 CTTGTAGAGCTTCTCGAAATCATACTTGCCG---TCCTCACTCACGAACTTCGGTAGGGC 130800 Query 111238 GATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGT 111297 ||| || || | ||||| ||||| ||||||| |||||||||||| | | || Sbjct 130801 GATCGACGCAAGGTTGCACACAGCGACCTCATCCGAATCTGTGTACTCGATCACCTCACA 130860 Query 111298 ACATAAGTTGGAACTCTTA---ATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCA 111354 || |||||| ||| ||||| || | |||| ||||| ||| || Sbjct 130861 GCACAAGTTG---CTCGAGCGGATCGTACCGAGGTTCTGCTGGTTCGACTTGCGATTCGC 130917 Query 111355 CGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTT 111414 |||||||||||| ||||| || ||||| |||||||| ||||||| | ||| || || Sbjct 130918 CGCATCCTTGTACAGCATATACGGCGTACCCGTCTCGATCTGTGACTCGAGGATGGCGAA 130977 Query 111415 CCAAACATCGGCGGCTG-GTACA-ATGGCGTTG---GCCCGTCCCTCCGCCTCGTACTTT 111469 ||| | || |||| | || |||| ||| ||| |||||| || || ||||| Sbjct 130978 CCAGA-----GCTGCTGAGCACGGATGGTCTTGCGAGCCTTTCCCTCAGCTTCATACTTG 131032 Query 111470 GTGTAGAGGGCTTCAAACTCCTCACCCACCGCG-TCGGAGAGACCTGGTGCCTTGTCTGG 111528 | ||| | | || |||||||| ||| | || ||| |||||||| | || | || ||| Sbjct 131033 GCGTACAACGTCTCGAACTCCTCGCCC-CAGCACTCGTAGAGACCTTGAGCTTCGTTTGG 131091 Query 111529 ACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCA 111588 ||||| | | ||||| ||| |||| || ||||||||||| | ||||| ||||| Sbjct 131092 GCAGAACAAACTCCATTCACCGTTCGCCTCCACACGCTTCATGAACAAATCTGGGATCCA 131151 Query 111589 CAGGGATGAAAAGAGATCTCTA-CACC---GAGCCTCTTCGTCACCTTGGTTGAGTCGT- 111643 || ||||||| || | | ||| |||| || | ||| ||||| || | Sbjct 131152 CAACCCGTAAAAGAGGTCACGAGCACGATGGAGC----TCATTACCGTGGTTCT-TCTTC 131206 Query 111644 AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCC 111703 || || | |||||| | ||| ||||||||||||||||| | |||| |||| || ||| Sbjct 131207 AAGTCCAAGAACTCGAAGATGTCCGCGTGCCATGGCTCCAAGTAGATGGCGAACGAACCC 131266 Query 111704 TTTCGAC-GCC--CAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATT 111760 || || ||| | | || | || ||||| || ||| |||| || || || | |||| Sbjct 131267 TTGCGCTTGCCTCCGCCCTGGTCAACGTAGCGAGCCGTGTCGTTGAACACACGCAACATT 131326 Query 111761 GGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACA 111820 |||| | ||||| || || || || || ||||| | ||| |||| | | Sbjct 131327 GGAACGAGACCATTCGACGATCCGTTCGTACCGCGAATGTAACTGTTAGTGGCACGGATG 131386 Query 111821 TCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGA 111880 | || || || || || || || |||||||| ||||| || || | | | || Sbjct 131387 TTGTGCATACTGATACCGATGCCACCGGCCCACTTGGAGATAGATGCGCAGTTCTTGAGC 131446 Query 111881 GTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATC 111940 || | |||||||| | || ||||| ||||| |||| | | ||| || |||| | Sbjct 131447 GTGTCGTAGATACCCTCAATGGAGTCATCCTTCATGGCAAGCAAGAAACACGACGACAAC 131506 Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 || || | ||| ||||| | ||||| || ||||||| ||||| |||| | |||||| Sbjct 131507 TGAGGGCGTGGCGTACCCGAGTTGAAAAGAGTTGGTGAGCCGTGAGTGAAGAAGCCTTGG 131566 Query 112001 GACATCTTGTCGTATGTCTCCAAGA-CAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059 ||||| | |||||| ||| |||| || | || ||||| |||||||||||| Sbjct 131567 GACATGTAGTCGTACATCT-GAAGAGCACCGGCGATATCTTCTTTGTGGATGCCGATACA 131625 Query 112060 GACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA 112119 || || | || ||| | |||||| ||||| | |||||| | || ||||| Sbjct 131626 CACGCGTAAGATCATCTGCTGTGGACGCTCCATCACCTTGCCATTAATGCGGAAGAGATA 131685 Query 112120 -GCTCTTCTCAAGGGTTTTGAGACCAAAGTA 112149 | || | || || || |||| |||||||| Sbjct 131686 CGATCGT-TCCAGCGTCTTGAAGCCAAAGTA 131715 Score = 199 bits (220), Expect = 5e-46 Identities = 901/1466 (61%), Gaps = 43/1466 (3%) Strand=Plus/Minus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||| ||||| || ||| |||| |||| | || || || || | ||| || || || || Sbjct 124906 GTACATGTTGGTCGTGAATGGCTCAATCGACTCGTTGTTRCCGAGGATCTGYGCCGTCGA 124847 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826 || |||||||| || |||| ||| | ||| || | ||| | |||| | | | | Sbjct 124846 YGCYGTTGGCATAGGCGCCAACAACAACGAGTTGCGCACACCGTGCTCCATCACCTGAGC 124787 Query 110827 CTTGAGAACATCCCAGTCGTAGTTGAGCT----TGGTTTCACCTTCCCACATGTCAAACT 110882 ||| | | | |||||| | || | ||| |||| |||||||||| |||| Sbjct 124786 CTTCAACGCGTTCCAGTCCCACATGCCCGACGATGGCGTCACAC-CCCACATGTCRAACT 124728 Query 110883 G-AAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCA 110941 | ||| |||||| | | || || || | || || || || | ||| | | | | Sbjct 124727 GGAAGATGCCCTTGCT-CACTGGYGAGCCAGCRAACGTCTCGTATGGACCRTKSACCTYA 124669 Query 110942 GCCAATTCACAGCT-CGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATT 111000 || || || || | |||||||| | | |||| || || ||||| | || Sbjct 124668 GCYAACTC-CATCGACGCCTCCATCGCACCAAAGTACAGCGTCTCGAAGATGTGCTTGTT 124610 Query 111001 CATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAG 111060 || ||| || || || || || |||||| || || || ||| ||||| Sbjct 124609 CAACTCGCGAGCCTCGTCACTTTCGAACGCGTAGTTCATCAGGATGAACGTATCGGCGAG 124550 Query 111061 ACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTC-AA 111119 ||| || ||||| | ||| ||||| | ||| ||||| || ||| || ||| | Sbjct 124549 ACCCTGCACACCGAKACCRATAGGACGGTGGCGCATGTTRCTCTTCTTGGCC-TCTGGRA 124491 Query 111120 CGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTT 111179 || || | || |||| ||||| ||| || || || || || || | | | Sbjct 124490 TYGGGTAGTAGTTGATGTCGATGACCTTGTTCAGGTTCTTCGTCACYWKYTTGGYTACCT 124431 Query 111180 CATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGA 111239 | | || | | || | ||| || ||| || |||| || || || | Sbjct 124430 KGTASARCTTCTSGAARTCRTACTTGCCR---TCCTCACYCACGAACTTYGGWAGRGCRA 124374 Query 111240 TTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTAC 111299 | || || | ||||| ||||| ||||||| |||||||||||| | | || | Sbjct 124373 TCGACGCRAGGTTGCAYACAGCSACCTCATCCGAATCTGTGTACTCGATCACCTCACAGC 124314 Query 111300 ATAAGTTGGAACTCTTA---ATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACG 111356 | |||||| ||| ||||| || | |||| ||||| ||| || || Sbjct 124313 ACAAGTTG---CTCGAGCGGATCGTACCGAGGTTCTGCTGGTTCGACTTGCGRTTSGCCG 124257 Query 111357 CATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCC 111416 | |||||||| | ||| || ||||| |||||||| |||| || | ||| || || || Sbjct 124256 CRTCCTTGTACARCATRTAMGGCGTACCCGTCTCGATCTGYGACTCGAGRATRGCGAACC 124197 Query 111417 AAACATCGGCGGCTG-GTACA-ATGGCGTTG---GCCCGTCCCTCCGCCTCGTACTTTGT 111471 | | || |||| | || |||| ||| ||| ||| || || || ||||| | Sbjct 124196 AGA-----GCTGCTGAGCACGGATGGTCTTGCGAGCCTTTCCYTCAGCTTCRTACTTGGC 124142 Query 111472 GTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGCCTTGTCTGGAC 111530 ||| | | || ||||| || ||| | || | |||| || | || | || || | Sbjct 124141 GTACAAYGTCTCGAACTCYTCRCCC-CAGCASYYGTAGAGRCCWKGRGCYTCGTTYGGGC 124083 Query 111531 AGAAAAGAGACCATTGACCACCTTC--CTCAACCCGCTTCATGAAAAGGTCTGGAATCCA 111588 |||| | | ||| | || ||| || || ||||||||||| | ||||| ||||| Sbjct 124082 AGAACAAACTCCAKTCRCCG--TTCGMYTCCACACGCTTCATGAACAAATCTGGGATCCA 124025 Query 111589 CAGGGATGAAAAGAGATCTCTA-CACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT-AAC 111646 || | || | || | | ||| | || | | ||| ||||| || | || Sbjct 124024 CAACSCGTARAAKARRTCACGAGCACGRTGGAGCT-CATTACCGTGGTTCT-TCTTCAAG 123967 Query 111647 TCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTT 111706 || | |||||| | ||| ||||||||||||||||| | |||| |||| || ||||| Sbjct 123966 TCCAAGAACTCGAAGATGTCCGCGTGCCATGGCTCCAAGTAGATGGCGAACGAACCCTTG 123907 Query 111707 CGAC-GCC--CAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGA 111763 || ||| | | || | || ||||| || ||| |||| || || || | ||||||| Sbjct 123906 CGCTTGCCTCCGCCCTGGTCAACGTAGCGAGCCGTGTCGTTGAACACACGCAACATTGGA 123847 Query 111764 ATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCA 111823 | | ||||| || || || || || ||||| | ||| |||| | | | Sbjct 123846 ACGAGACCATTCGACGATCCGTTCGTACCGCGAATGTAACTGTTAGTGGCACGGATGTTG 123787 Query 111824 TGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTT 111883 || || | || || || || |||||||| ||||| || || | | | || || Sbjct 123786 TGCATRCTGAYACCGATRCCACCGGCCCACTTGGAGATRSAWGCGCAGTTCTTGAGCGTG 123727 Query 111884 CCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGC 111943 | |||||||| | || ||||| ||||| | || | | ||| || || | ||| Sbjct 123726 TCRTAGATACCCTCRATGGAGTCATCCTTCATRGCAAGCAAGAARCACGACGAYARCTGA 123667 Query 111944 GGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGAC 112003 || | || ||||| | ||||| | ||||| | |||| |||| | |||||| Sbjct 123666 GGRCGWGGCGTACCMGMGTTGAAMARRGTTGGYGWSSCGTGMGTGAAGAAGYYYTGGGAC 123607 Query 112004 ATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACC 112063 || | ||||| ||| | | | || ||||| |||||| || || || Sbjct 123606 ATGTAKTCGTASRTCTSRAGMGCMSCSGCRATRTCTTCYTTGTGGATRCCRATRCWCACR 123547 Query 112064 CGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAGCTC 112123 || | | ||| | |||||| ||||| | ||||| | || | || Sbjct 123546 CGYAARATCATCTGCTGTGGACGCTCCATCACCTTGCCAYYAATGCGSARSARRTACGAY 123487 Query 112124 TTCTCAAGGGTTTTGAGACCAAAGTA 112149 || || || |||| |||||||| Sbjct 123486 YKYTCMAGCGTCTTGAAGCCAAAGTA 123461 >seq1 Length=1427593 Score = 156 bits (172), Expect = 5e-33 Identities = 384/578 (66%), Gaps = 12/578 (2%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || || || |||||||| |||||||||||||| || | || || | ||||| Sbjct 981793 TATTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATATCCATC 981852 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGACGA 122490 |||||||||| || |||||| | || | || |||| | ||| |||||| Sbjct 981853 CAGTCAAATGGGTTAGACGCGTTGTAGATCTTCGAGACACCAAGAGCGTGGAGAAGACGA 981912 Query 122491 TCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACAT 122550 || | || |||| ||||||| | |||| | | |||||||||||||| || | | Sbjct 981913 TCAGCGACGAACTCGATGTACTGGCACATGAGCGCCGAGTTCATACCGATAAGCTCGACT 981972 Query 122551 GGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGG 122610 ||||| | |||| || |||| | ||||| ||| || || || | || || ||||| Sbjct 981973 GGGAGCGAGTCCTTGACGAACTCCTTCTCGATCGTGACGGCATCACTGACAATCTCGTGG 982032 Query 122611 AT---AGTTTC-GGTAGTGGGTCTATTACGCAAAG--TCTTGAAGAGCTCCACGGCAAAC 122664 || | || || || ||| | || ||| | ||| ||||| ||| || Sbjct 982033 ATTCGCGACTCTGGGAGACGGT---TGAC---AAGCTTGTTGTAGAGCAAGCAGGCGAAG 982086 Query 122665 TCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATG 122724 || ||||||||| || || || ||||| || || ||||||| || || |||||| Sbjct 982087 TCACAGTGGAGACCTTCGTCACGACTGATAAGCTCGTTCGAGAAGCTGAGGCCAGGCATG 982146 Query 122725 AGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCC 122784 ||||| |||||||| | ||| | | | |||||| || || ||||||||||||||||| Sbjct 982147 AGACCACGCTTCTTGAGCCAGAAGACCGAGCAGAACGAACCCGAGAAGAAGATACCCTCA 982206 Query 122785 ACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTC 122844 | || || || | | || || || || | | || || ||| |||| Sbjct 982207 ATGGCAGCGAAGGCGACGACACGCTCAGCAAACGCGGCGTTCTCTGAGTCACACCAGCGG 982266 Query 122845 ATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGC 122904 | ||||| || |||||||||| | ||||| | || | ||||| || || || Sbjct 982267 AGCGCCCAGTTGGCCTTCTTCTGCACGCATGGGATTGTCTCAATGGCGCGGAACAAGTGG 982326 Query 122905 TTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAA 122942 ||||| || | ||||||| ||||| |||||||||| Sbjct 982327 TTCTTCTCGGCGGCATCCTTGATGTACGTGTCAATCAA 982364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628029330864000