Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F002073175.1_202017-03-28] 340 sequences; 36,794,057 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq275 300 5e-76 seq306 212 2e-49 seq235 107 6e-18 seq296 100 9e-16 seq47 89.7 2e-12 seq314 86.0 2e-11 >seq275 Length=1119275 Score = 300 bits (332), Expect = 5e-76 Identities = 964/1477 (65%), Gaps = 28/1477 (2%) Strand=Plus/Plus Query 349205 GGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTAGAA 349264 || ||||| | || || || || || || || | ||| ||||| ||||||||||| || Sbjct 322844 GGTATCGACCTCGGCACGACGTACTCGTGCGTCGGTGTGTGGCAGAATGATCGTGTGGAG 322903 Query 349265 ATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACT 349324 || || || || ||||| || ||| | || |||||||| || || || || ||||| | Sbjct 322904 ATCATCGCCAACGATCAGGGCAACCGCACGACGCCATCGTATGTGGCCTTCACCGATTCG 322963 Query 349325 GAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTT 349384 || ||| | || |||||| |||| || ||||||| || || | | || ||||| Sbjct 322964 GAACGTCTCATCGGTGATGCTGCGAAGAATCAAGTGGCGATGAACGCGAGCAACACGGTG 323023 Query 349385 TTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCTGATCTA 349444 || || || |||||||| |||||| | | || | ||| | ||| | || | Sbjct 323024 TTCGACGCCAAGCGACTCATTGGTCGCAAATTCACGGACTCGATTGTTCAAGCCGACATG 323083 Query 349445 AAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTTGAA 349504 || |||| ||||||| || | | | || || || ||| || | | || Sbjct 323084 AAGCATTGGCCTTTTAAGGTCACTGCTGGCGCAGGCGACAAGCCACAGATCACGATCGAG 323143 Query 349505 TATAAAGGTGAACAAAAACAATTTTTACCCGAAGAA-ATTTCATCAATGGTTTTAGTTAA 349563 | || || || || || | ||| | ||| || | ||||| || ||||| || || Sbjct 323144 TTCAAGGGCGAG-AAGAAGACTTTCCAGCCGGAGGAGATTTCGTCCATGGTGCTAACCAA 323202 Query 349564 AATGAAGGAAATTGCTGAAGCATATTTAGGTGAAAC---AGTAACTGATGCTGTTATTAC 349620 |||||||||||||| || || || || || ||| ||| | | || || | || Sbjct 323203 GATGAAGGAAATTGCGGAGGCGTACTTGGG---AACGGAAGTTAAGAACGCCGTCGTCAC 323259 Query 349621 TGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGC 349680 || |||||||| || || || | |||||| || || |||||| || | |||||| Sbjct 323260 GGTTCCAGCCTACTTCAACGACTCGCAGCGTCAAGCCACGCGAGATGCGGGTACCATTGC 323319 Query 349681 GGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCT 349740 || || || || || | || || ||||| || || || || || || || || || | Sbjct 323320 TGGTTTGAACGTGCTTCGTATCATCAATGAGCCGACAGCAGCGGCTATCGCGTACGGTTT 323379 Query 349741 TGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTT 349800 || || | | | | | ||| ||| |||| || ||||| || || |||||||| || Sbjct 323380 GGACAAGAAGGGCGGC---GAACGCAATGTTCTCATCTTTGACTTGGGCGGTGGTACCTT 323436 Query 349801 TGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGA 349860 ||||| || || | | ||||||| || |||||||| || || || || || ||||| Sbjct 323437 CGATGTGTCGCTGTTGAGCATTGAAGAAGGCATTTTTGAGGTCAAGGCGACCGCCGGTGA 323496 Query 349861 TACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATT 349920 ||| |||||||| || ||||| |||||||| ||| | ||| | | || || || || Sbjct 323497 TACCCATCTTGGCGGTGAAGACTTTGATAACCGTTTGGTTGAGTACTTCGTCGCGGAGTT 323556 Query 349921 TAAGCGTCAAGC-TAAAATTGATAT-TGGAGATAATCCTAGAGCAATGCGTCGCCTAAGA 349978 ||||| ||||| | | ||| | ||| || | | ||| ||||||| || | Sbjct 323557 CAAGCG-CAAGCATCGCAAGGATCTCACGAG-CAACCAACGTGCATTGCGTCGTCTGCGT 323614 Query 349979 ACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAATT 350038 || || ||||||||||| ||||| || | ||||| | || || | | ||||| ||| Sbjct 323615 ACGGCTTGTGAACGTGCGAAGCGCACCCTTTCATCGTCCACTCAGGCGTACATTGAGATT 323674 Query 350039 GATTCTCTTGCTGATGGCAAAGA-TTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGA 350097 || || || ||||||| || ||| || | || || ||||| || || ||||| Sbjct 323675 GACTCGCTCTTCGATGGCATCGACTTTAACAGCA-CCATCACTCGTGCGCGTTTCGAAGA 323733 Query 350098 ATTATGTATGGATCTTTTTAGAGCA--ACAATGGATCCTGTGGAAAAAGTATTAAAAGAT 350155 | || || || || ||| || ||||| || ||||| || || | | || Sbjct 323734 CATGTGCGCTGA-CTACTT-CCGCAAGACCATGGAACCAGTGGAGAAGGTGCTCCAGGAC 323791 Query 350156 GCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATT 350215 || || | ||||| || | | ||||| || || || || || || || ||||| Sbjct 323792 GCCAAGCTCTCCAAGGGCCAAGTGCACGAAGTCGTCTTGGTCGGCGGCTCGACGCGTATC 323851 Query 350216 CCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATT 350275 || || || || ||| | || ||| || || || |||||||| || | | || || Sbjct 323852 CCGAAGGTGCAGCAGCTTCTGGGTGACTTCTTCAACGGCAAAGAGCCATGCAAGTCGATC 323911 Query 350276 AATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGG---A 350332 ||||| ||||| || || || | |||||||| || ||||| | || | ||| Sbjct 323912 AATCCGGATGAGGCCGTGGCGTTCGGTGCTGCCGTGCAGGCTGCGATCCTCAGTGGTGAG 323971 Query 350333 AATAAGAGTTCTAAAATTGATGATCTATTACTACTAGATGTAACTCCACTTTCGCTTGGA 350392 | ||| || || | | ||||| || | || ||||| || || || || || || Sbjct 323972 GACAAGTCGTCCAAGCTCCAGGATCTCTTGTTGCTCGATGTGACGCCGCTATCACTCGGT 324031 Query 350393 TTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTACCTACA 350452 | || || | |||| || ||||| || || ||| | || | |||| ||||| Sbjct 324032 CTCGAGACGGCCGGTGGCGTCATGACGACGCTGATCCCTCGTAACACGGCTGTGCCTACG 324091 Query 350453 AAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATTCAAGTA 350512 || ||||| || || || || || | || || || ||||| | || ||||| || Sbjct 324092 AAGAAGTCGCAGACCTTCTCGACGTACGCGGACAACCAGCCTGGCGTGTTGATTCAGGTG 324151 Query 350513 TTTGAAGGTGAACGTGCTCG--CACTAAAGATAATAATAAACTTGGAGAATTTACCCTAA 350570 |||||||| || | ||||| || || || || || ||||| | || | || Sbjct 324152 TTTGAAGGCGA--GCGCTCGTTGACCAAGGACAACAACTTGCTTGGCAAGTTCAGTCTCG 324209 Query 350571 GTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATATTGATT 350630 | |||||||| |||||| | || || | || ||||| | |||||||| ||| Sbjct 324210 ACGGCATTCCACCGATGCCTCGCGGCAAGCCAGAAATCGAAGTGACGTTCGATATCGATG 324269 Query 350631 CAAATGGTATTTTAAATGTTACCGCAGTTGAAAAATC 350667 | |||||||| | || || |||| || || || || Sbjct 324270 CCAATGGTATCCTCAACGTCTCCGCGGTGGAGAAGTC 324306 >seq306 Length=154994 Score = 212 bits (234), Expect = 2e-49 Identities = 935/1464 (64%), Gaps = 26/1464 (2%) Strand=Plus/Minus Query 349217 GGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTAGAAATAATTGCAAAT 349276 || || || || || || || | ||| |||||| | || || || || || ||||| || Sbjct 88342 GGCACGACGTACTCGTGCGTCGGTGTGTGGCAACACGACCGCGTGGAGATCATTGCCAAC 88283 Query 349277 GATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACTGAGCGTATGATT 349336 || || || ||| | || ||||| || ||||| || || || || || |||||| | ||| Sbjct 88282 GACCAGGGCAACCGCACGACGCCGTCCTACGTGGCTTTCACGGACACGGAGCGTCTAATT 88223 Query 349337 GGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTTTTTGATGCTAAG 349396 |||||| | || || || |||| || ||| | | || ||||| ||||| || || Sbjct 88222 GGTGATGCGGCCAAGAACCAAGTCGCAATGAATGCGGAGAACACGGTGTTTGACGCCAAA 88163 Query 349397 CGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCTGATCTAAAACATTTTCCT 349456 || | || || | | || ||| || |||| | ||||| | || Sbjct 88162 CGTTTGATCGGACGCAAGTTCCAGGACCCGGTCGTGCAGGCTGACATGAAACACTGGCCG 88103 Query 349457 TTTACTGTTGTTCC---AAAAGACGGTGATAAACCAATTATTGAGGTTGAATATAAAGGT 349513 || | || | || ||||| | || || |||| ||| | | || || Sbjct 88102 TTCAAAGTGCGAGCGGGAACAGACG---ACAAGCCGCAGATTGTGGTCCAGTTCAAGGGC 88046 Query 349514 GAACAAAAACAATTTTTAC-CCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGA 349572 || || || | || ||| ||||||| ||||| ||||| | || ||| || Sbjct 88045 GAGCAGAAG-ACGTTCTACGCCGAAGAGATTTCGAGTATGGTGCTCACCAAGATGCGCGA 87987 Query 349573 AATTGCTGAAGCATATTTAGGTGAAACAG-TAACTGATGCTGTTATTACTGTACCAGCCT 349631 ||||| || || || | || || ||| | | | || || ||||| || || || | Sbjct 87986 CATTGCCGAGGCTTACATTGGC-AAGCAGGTCAAGAACGCGGTGATTACCGTGCCGGCGT 87928 Query 349632 ATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATG 349691 |||| || || | ||||| || || || |||||||| |||||| || || |||| Sbjct 87927 ATTTCAACGACTCGCAGCGGCAGGCGACCAAGGATGCTGGGGCCATTGCTGGCTTGAATG 87868 Query 349692 TTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGA 349751 | | | || || ||||| ||||| || ||||| || || ||||| || ||| | | Sbjct 87867 TGTTGCGTATAATCAATGAGCCCACCGCGGCAGCCATCGCCTATGGTCTGGATCGCAAGG 87808 Query 349752 GTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCAC 349811 | | | || | || | || || |||||| | |||||||| || || || || | Sbjct 87807 GAGGC---GAGCACCATGTGCTCATCTTTGATCTTGGTGGTGGGACGTTCGACGTGAGTC 87751 Query 349812 TACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTG 349871 | || || | |||||||| ||||| ||||| || ||||| || || || || ||||||| Sbjct 87750 TGCTGACGATCGAAGAGGGCATTTTCGAAGTCAAGGCAACGGCAGGAGACACGCATCTTG 87691 Query 349872 GTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAG 349931 |||||||||| ||||| |||||||| || | |||| || || || || ||||| |||| Sbjct 87690 GTGGAGAAGACTTTGACAATCGTCTTGTGGAGTATTTCGTCAACGAGTTCAAGCG-CAAG 87632 Query 349932 CTA--AAATTGATAT-TGGAGATAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTG 349988 || | || || ||| | || |||| |||||||| | | || || |||| Sbjct 87631 -TACCGCAAGGACATGACGAG-CAGTCAGCGAGCCTTGCGTCGCTTGCGCACGGCATGTG 87574 Query 349989 AACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTG 350048 | ||||| || || | | || || | | || | | | |||| ||||| || || Sbjct 87573 AGCGTGCCAAACGCACGCTCTCGTCCTCGGCTCAGGCGTATCTTGAGATTGACTCGCTGT 87514 Query 350049 CTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGAATTATGTATGG 350108 ||| ||| || ||| || | || || ||||| ||||||||||| || ||| || Sbjct 87513 TTGAAGGCGTTGACTTCAACTCCACGATCACTCGTGCGCGGTTTGAAGACTTGTGTGCGG 87454 Query 350109 ATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCA 350168 || || | || |||||||| || || || | ||| | || |||| | Sbjct 87453 ATTACTTCCGTAAGACGATGGATCCAGTTGAGCGTGTGCTGCGCGATTCCAAGCTGTCAA 87394 Query 350169 AAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAAC 350228 | | || | |||| | || || || || || || || || || || || | || | Sbjct 87393 AGCGTGAGGTCAATGAGATCGTGTTGGTCGGCGGATCGACCCGCATCCCCAAGATCCAGC 87334 Query 350229 AGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGA--TCAATTAATCCAGATGA 350286 || | | || || ||||| ||||||| || ||| || | || || ||||| ||||| Sbjct 87333 AGCTCTTGTCGGACTTTTTCCATGGCAAGGA--CTTGTACAAGTCGATCAATCCGGATGA 87276 Query 350287 AGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGG---AAATAAGAGTTC 350343 ||| || || | ||| ||| |||| || | | || | || || | ||| Sbjct 87275 AGCCGTGGCGTTTGGAGCTACTGTGCAATCGGCGATCCTCTCGGGCTCGGACAAGTCAAG 87216 Query 350344 TAAAATTGATGATCTATTACTACTAGATGTAACTCCACTTTCGCTTGGATTAGAAACTTC 350403 ||| | | ||||| || || | || || || ||||||||| | || || || || | Sbjct 87215 TAAGCTGCAGGATCTGTTGCTCTTGGACGTGACGCCACTTTCGTTGGGCTTGGAGACGGC 87156 Query 350404 TGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTACCTACAAAAAAGTCCCA 350463 |||| || ||||| |||||| | | || | || || || || || ||||| || Sbjct 87155 CGGTGGCGTCATGACGACGCTTATTGCGCGTAACACGACAGTGCCGACGAAGAAGTCGCA 87096 Query 350464 AACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATTCAAGTATTTGAAGGTGA 350523 || || || || | || || || ||||| | || || ||||| || ||||| || Sbjct 87095 GACGTTCTCGACCTACGCTGACAACCAGCCGGGTGTCTTGATCCAAGTGTTCGAAGGCGA 87036 Query 350524 ACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTTACCCTAAGTGAAATTCCACC 350583 ||| | || || || | | || | |||| ||| | | ||||| Sbjct 87035 GCGTACGATGACGCGGGACAACCACTTGTTGGGCAAGTTTAACCTCGACGGTTTGCCACC 86976 Query 350584 AATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATATTGATTCAAATGGTATTTT 350643 |||||| | || || || ||||| || || | |||||||| || | ||||| ||||| Sbjct 86975 GATGCCTCGCGGTGTCCCACAGATCGACGTGACGTTCGATATCGACGCTAATGGCATTTT 86916 Query 350644 AAATGTTACCGCAGTTGAAAAATC 350667 || || | || || || || || Sbjct 86915 GAACGTGTCGGCGGTCGAGAAGTC 86892 >seq235 Length=453453 Score = 107 bits (118), Expect = 6e-18 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 140574 GTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATT 140633 || || || || || || || || ||||||||||| | || |||||||| |||||||| Sbjct 11170 GTACGGCCGTCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGATCTGGAGGAATG 11229 Query 140634 CCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCA 140693 ||||| || ||||| || || || || || |||||||| || || || || || || Sbjct 11230 CCTTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCAATCGAGTCCGAAGGCTCGACGTCC 11289 Query 140694 AGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | |||| ||||| ||||| ||||| || || || |||||||| Sbjct 11290 AACGTAATGGTCTTGCCGGTGAGTGTCTTGACGAAGATCTGCAT 11333 >seq296 Length=213998 Score = 100 bits (110), Expect = 9e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || | || | || ||||| || || || || || || || Sbjct 98301 ACCACCACGAAGACGGAGCACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCCGA 98360 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || || || || || || || || || ||||| ||||| ||||| || || || Sbjct 98361 GAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGTGG 98420 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 ||||||||| || ||||| || || || || || ||||| || ||||| || || Sbjct 98421 AATTCCTTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCAATGCTGTCCGATGGCTCGAC 98480 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | ||||| || || || || || ||||| |||||||| Sbjct 98481 ATCGAGCGTGATGGTCTTGCCCGTCAGAGTCTTCACAAAGATCTGCAT 98528 >seq47 Length=722260 Score = 89.7 bits (98), Expect = 2e-12 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || | || || || ||||| || || || || || || || Sbjct 455342 ACCACCACGAAGGCGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 455401 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 || || || ||||| ||||| || || ||||| ||||| ||||| |||||||| ||||| Sbjct 455402 CAAGGTGCGGCCATCCTCAAGCTGCTTACCAGCGAAGATCAGACGCTGCTGATCTGGAGG 455461 Query 140630 AATTCCT 140636 ||||||| Sbjct 455462 AATTCCT 455468 >seq314 Length=100689 Score = 86.0 bits (94), Expect = 2e-11 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 74488 GTGGGATTCGAACCCACGAGTCTTACGACAGTAGAACTTGAGTCTACCCCCTTAGACCAC 74547 |||||||| |||||||||||| | |||||||||||||||||||||||||| |||| | Sbjct 99783 GTGGGATTTGAACCCACGAGTGCGAACACAGTAGAACTTGAGTCTACCCCCTTGGACCGC 99842 Query 74548 TCGGGCA 74554 ||||||| Sbjct 99843 TCGGGCA 99849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515247799173020