Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F002073175.1_202017-03-28] 340 sequences; 36,794,057 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq296 140 3e-28 seq235 96.9 3e-15 >seq296 Length=213998 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || |||||||| |||||| | || || || || || || || || Sbjct 98528 ATGCAGATCTTTGTGAAGACTCTGACGGGCAAGACCATCACGCTCGATGTCGAGCCATCG 98469 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||| | ||||| || || || || ||||| ||||| || ||||| || || Sbjct 98468 GACAGCATTGACAACGTCAAGCAGAAGATCCAGGACAAGGAAGGAATTCCACCAGACCAG 98409 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||| || | || ||| | || | || || |||||| Sbjct 98408 CAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAAC 98349 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || |||||||||||||| || ||||| | ||| | || ||||| Sbjct 98348 ATCCAGAAGGAGTCGACCTTGCACTTGGTGCTCCGTCTTCGTGGTGG 98302 >seq235 Length=453453 Score = 96.9 bits (106), Expect = 3e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || ||||||||| | ||||| | || || || || || Sbjct 11333 ATGCAGATCTTCGTCAAGACACTCACCGGCAAGACCATTACGTTGGACGTCGAGCCTTCG 11274 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||||||||| | ||||| || || || || ||||| |||||||| || || ||||| Sbjct 11273 GACTCGATTGACAACGTCAAGCAGAAGATCCAGGACAAGGAAGGCATTCCTCCAGATCAG 11214 Query 27108 CAGCGTTTAAT 27118 ||||| || || Sbjct 11213 CAGCGATTGAT 11203 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||||||||| | || || ||||| || || || || Sbjct 29303 ATGCAGATCTTCGTGAAGACATTGACCGGCAAGACGATCACGCTTGACGTCGAGCCTTCG 29362 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||||||||| | || || || || || || ||||| || || || || || ||||| Sbjct 29363 GACTCGATTGACAACGTGAAGCAGAAGATCCAGGACAAGGAGGGTATTCCTCCAGATCAG 29422 Query 27108 CAGCG 27112 ||||| Sbjct 29423 CAGCG 29427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434916551596800