Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F002073175.1_202017-03-28] 340 sequences; 36,794,057 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq268 192 5e-44 >seq268 Length=430982 Score = 192 bits (212), Expect = 5e-44 Identities = 468/704 (66%), Gaps = 4/704 (1%) Strand=Plus/Plus Query 34220 TTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGG 34279 || ||| |||| |||||||| || |||| |||| ||||| | || |||||| ||||| Sbjct 388630 TTCCCGGTGCTCACGACGAAGCGCGTGTTCTGGCGTGGCGTTGCAGAAGAGCTGTTGTGG 388689 Query 34280 TTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGAC 34339 ||| | || || | |||||| ||||| ||| | | || | | || |||||| Sbjct 388690 TTCATCAGCGGTGACACGAATGCCAAGACTCTCCAGGACAAGGACATTCATATTTGGGAC 388749 Query 34340 GCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATC-TCGGGAGGAGGGCGA 34398 | | || || || | || | |||| ||| | || ||| || | ||||| Sbjct 388750 GGCAATGGATCGAAGGAATACCTAGG-AAGCATCGGTCTCGGTCATCGCGAAGCAGGCGA 388808 Query 34399 CTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGA 34458 | || || || || || ||||||| | | |||||||| || ||||| | | | Sbjct 388809 TCTCGGTCCAGTGTATGGCTTCCAGTTGCGTCACTTTGGTGCCAAGTATACCGATATGCA 388868 Query 34459 AGCGGACTATTCGGGACAGGGAGCGGACCAGCT-GCAGTACGTGATCGACACCTTGAAGC 34517 || || || | || ||||| | ||| ||||| || | | || ||| ||| | ||| Sbjct 388869 CGCCGATTACACCGGTCAGGGTGTGGATCAGCTCGCTG-AGGTCATCCACAAGCTTAAGA 388927 Query 34518 GGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGA 34577 ||||| | ||| | | || | ||| || ||||| || || ||| || Sbjct 388928 CCAACCCGAACGACCGGCGTATTCTCTTGTCTGCATGGAATCCAGCAGACCTCAAGGAGA 388987 Query 34578 TGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCT 34637 ||||||| || |||||||||| ||||||| ||||||||||||||||| ||||| || | Sbjct 388988 TGGCGCTTCCTCCGTGCCACATGTTCTGCCAGTTCTACGTCGCGAATGGCGAGCTCTCGT 389047 Query 34638 GCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTT 34697 |||| | || || ||||||| |||||||| | || |||||||| || || || |||| Sbjct 389048 GCCAAATGTACCAGCGATCGGCTGACATGGGCCTCGGTGTGCCGTTTAATATCGCCAGTT 389107 Query 34698 ACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTGC 34757 |||| || | || |||||||||| |||| ||| | | || || | || | Sbjct 389108 ACGCGTTGTTGACCCGATTGATCGCTCAGGTCGCTGGGCTCAAGGCCGGTGACTTCGTCC 389167 Query 34758 ATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCAGCTGC 34817 || | || ||||| || |||||| |||| ||| |||||| |||| ||||||| || Sbjct 389168 ATGTCATTGGTGATGCACACATCTACTTGAATCACCTCGAGCCGCTCAAGATCCAGTTGG 389227 Query 34818 AACGAGAGCCCCGACCGTTCCCCCAGCTCAAAATTATTCGAGCCGTCACCTCAATCGATG 34877 ||| || || |||||||| ||| || | || || ||| ||||| | Sbjct 389228 GACGCACTCCTCGTCCGTTCCCGACGCTTCGCATCAATCCAGAGAAGACCAACATCGACG 389287 Query 34878 ACTTTAGGAGCGAGGACTTCGTGTTGGAAGGGTACCGGCCGCAC 34921 ||||| | || ||||| | | |||| |||||| ||||||| Sbjct 389288 ACTTTGAGTTCGGAGACTTTGAGCTGGATGGGTACAAGCCGCAC 389331 Score = 192 bits (212), Expect = 5e-44 Identities = 468/704 (66%), Gaps = 4/704 (1%) Strand=Plus/Minus Query 6424 GTGCGGCCGGTACCCTTCCAACACGAAGTCCTCGCTCCTAAAGTCATCGATTGAGGTGAC 6483 ||||||| |||||| |||| | | ||||| || | |||||| ||||| ||| Sbjct 389331 GTGCGGCTTGTACCCATCCAGCTCAAAGTCTCCGAACTCAAAGTCGTCGATGTTGGTCTT 389272 Query 6484 GGCTCGAATAATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAG 6543 || || | || ||| |||||||| || || ||| || ||||||| ||| Sbjct 389271 CTCTGGATTGATGCGAAGCGTCGGGAACGGACGAGGAGTGCGTCCCAACTGGATCTTGAG 389212 Query 6544 CCGCTCGATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGG 6603 | |||||| ||| |||| |||||| || ||||| || | ||| || | || || | Sbjct 389211 CGGCTCGAGGTGATTCAAGTAGATGTGTGCATCACCAATGACATGGACGAAGTCACCGGC 389152 Query 6604 AACCAACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAA 6663 | ||| |||| |||||||||| || | || |||||||| || || || || Sbjct 389151 CTTGAGCCCAGCGACCTGAGCGATCAATCGGGTCAACAACGCGTAACTGGCGATATTAAA 389092 Query 6664 CGGCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATT 6723 |||||| || | |||||||| ||||||| || || | ||||| || ||||| ||||| Sbjct 389091 CGGCACACCGAGGCCCATGTCAGCCGATCGCTGGTACATTTGGCACGAGAGCTCGCCATT 389032 Query 6724 CGCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTT 6783 |||||||||||| ||||||| |||||||||| || ||||||||| ||| || Sbjct 389031 CGCGACGTAGAACTGGCAGAACATGTGGCACGGAGGAAGCGCCATCTCCTTGAGGTCTGC 388972 Query 6784 CGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGAT 6843 || ||||| || ||| | || | | ||| | ||||| ||| | ||| ||| Sbjct 388971 TGGATTCCATGCAGACAAGAGAATACGCCGGTCGTTCGGGTTGGTCTTAAGCTTGTGGAT 388912 Query 6844 CACGTACTGC-AGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACT 6902 || | | || ||||| ||| | ||||| || | || || || | | | ||||| Sbjct 388911 GACCT-CAGCGAGCTGATCCACACCCTGACCGGTGTAATCGGCGTGCATATCGGTATACT 388853 Query 6903 CCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGA- 6961 || |||||||| | | ||||||| || || || || || | ||||| | || ||| Sbjct 388852 TGGCACCAAAGTGACGCAACTGGAAGCCATACACTGGACCGAGATCGCCTGCTTCGCGAT 388793 Query 6962 GATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACC 7021 || | ||| |||| | || | || || || | ||||||| || | | Sbjct 388792 GACCGAGACCGATGCTT-CCTAGGTATTCCTTCGATCCATTGCCGTCCCAAATATGAATG 388734 Query 7022 CCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCG 7081 || | | ||| ||||| |||||| | || || | |||||||| |||||| || Sbjct 388733 TCCTTGTCCTGGAGAGTCTTGGCATTCGTGTCACCGCTGATGAACCACAACAGCTCTTCT 388674 Query 7082 ACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAAA 7125 | ||||| |||| |||| || |||||||| |||| ||| || Sbjct 388673 GCAACGCCACGCCAGAACACGCGCTTCGTCGTGAGCACCGGGAA 388630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448260494884800