Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F002073175.1_202017-03-28] 340 sequences; 36,794,057 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq296 172 1e-37 seq235 104 5e-17 seq47 89.7 1e-12 >seq296 Length=213998 Score = 172 bits (190), Expect = 1e-37 Identities = 173/225 (77%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | ||| | || ||||| || |||||||| || |||| || || Sbjct 98307 ACGAAGACGGAGCACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGT 98366 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || || ||||||||||| |||||||| || || || ||||| || |||| ||| Sbjct 98367 GCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGAATTCC 98426 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||||||||||||| || || ||||| || ||| |||| || || || ||||| Sbjct 98427 TTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCAATGCTGTCCGATGGCTCGACATCGAG 98486 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| ||||| ||||| |||||||| ||||| | |||||| || Sbjct 98487 CGTGATGGTCTTGCCCGTCAGAGTCTTCACAAAGATCTGCATCTT 98531 >seq235 Length=453453 Score = 104 bits (114), Expect = 5e-17 Identities = 125/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 210948 AGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGA 211007 ||||| | || || || |||||||| || || ||||| | || || || || |||||| Sbjct 11167 AGGGTACGGCCGTCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGATCTGGAGGA 11226 Query 211008 ACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACC 211067 | |||||||||||||||||||| || || ||||| || || | ||| || || || Sbjct 11227 ATGCCTTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCAATCGAGTCCGAAGGCTCGACG 11286 Query 211068 TCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || | || || ||||| || ||||| ||||| || || | |||||| || Sbjct 11287 TCCAACGTAATGGTCTTGCCGGTGAGTGTCTTGACGAAGATCTGCATCTT 11336 Score = 87.8 bits (96), Expect = 4e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 210990 CGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATG 211049 || || || || ||||||| || ||||||||||||||||| || |||||||| || || Sbjct 29427 CGCTGCTGATCTGGAGGAATACCCTCCTTGTCCTGGATCTTCTGCTTCACGTTGTCAATC 29368 Query 211050 GTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACC 211109 | ||| || || || || || ||||||||||| || || | ||||| || || | | Sbjct 29367 GAGTCCGAAGGCTCGACGTCAAGCGTGATCGTCTTGCCGGTCAATGTCTTCACGAAGATC 29308 Query 211110 TGCATTTT 211117 ||||| || Sbjct 29307 TGCATCTT 29300 >seq47 Length=722260 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 |||||||||||||||||||| || || || || || ||| |||| || ||| || || Sbjct 455541 CCTTCCTTGTCCTGGATCTTCTGCTTGACATTGTCAATGCTGTCGGATGGTTCGACATCC 455600 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| |||||||| ||||| || || | |||||| Sbjct 455601 AGGGTGATGGTCTTCCCCGTGAGGGTCTTCACGAAGATCTGCAT 455644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159146950444100