Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F002073175.1_202017-03-28] 340 sequences; 36,794,057 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq320 196 1e-44 seq296 122 2e-22 seq235 102 2e-16 seq237 100 7e-16 >seq320 Length=71188 Score = 196 bits (216), Expect = 1e-44 Identities = 216/288 (75%), Gaps = 0/288 (0%) Strand=Plus/Minus Query 7440 AACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGAT 7499 ||| ||||||||||| ||| ||| ||| | ||| || | ||||| | ||| ||| | | Sbjct 56103 AACTTTATATTTAATTTTTAGTGCTTTTGCGGGTGTTGTTGGTACAACATTATCTCTTTT 56044 Query 7500 TATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTA 7559 || | | |||||||| || ||| |||||| || | |||||| ||| | || Sbjct 56043 AATTCGTATGGAATTAGCACAACCTGGTAATCAAATTTTTATGGGTAATCATCAATTATA 55984 Query 7560 CAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTAT 7619 || ||| || |||| || ||||| ||| ||||| |||||||||| |||||||| | | | Sbjct 55983 TAATGTTGTTGTTACTGCTCATGCTTTTATTATGGTTTTCTTTTTAGTTATGCCAGCTTT 55924 Query 7620 GATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTT 7679 || || ||||| || ||||| || |||||||||||||| ||||| |||||||||||||| Sbjct 55923 AATTGGAGGTTTTGGTAATTGGTTTGTTCCTTTAATGATAGGTGCACCTGATATGGCTTT 55864 Query 7680 TCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 ||| | | || |||||||||||||| ||| |||| || | ||||| Sbjct 55863 TCCTCGTATGAATAATATAAGTTTTTGGTTATTACCTCCAGCTTTATT 55816 Score = 114 bits (126), Expect = 3e-20 Identities = 102/125 (82%), Gaps = 6/125 (5%) Strand=Plus/Plus Query 6750 AGCCTTTTCCCTTTAACT----TGAGAGAATGATCAGCCACATTGGGACTGA-AAACGGC 6804 ||||| || ||||| || ||| |||||||||||||||||||||||||| | ||||| Sbjct 14618 AGCCTATTATCTTTAGCTGGTTTGAAAGAATGATCAGCCACATTGGGACTGAGACACGGC 14677 Query 6805 CCAAGTCTTCTAAAAGGGCAGCAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGA 6864 |||| ||| | || ||||||||||| |||| || ||||||| |||||||||||||| | Sbjct 14678 CCAA-ACTTTTTTAAAGGCAGCAGTGGGGAATTTTGGACAATGAGCGAAAGCTTGATCCA 14736 Query 6865 GTAAT 6869 | ||| Sbjct 14737 GCAAT 14741 Score = 89.7 bits (98), Expect = 1e-12 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 7731 AGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACA 7790 || ||||||||| |||| |||| |||| ||||||||||||| ||||||||||| | | Sbjct 19186 AGAGTTGGTAAGGTTCTGCGCGTATTATCGAATTAAACCACATGCTCCACCGCTTGTGTA 19127 Query 7791 ATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGA 7844 || |||||| || |||||| ||| || |||||| | || | ||||| ||| Sbjct 19126 GACTCCCGTCAATTCCTTTGAATTTCAATCTTGCGATTATACTTTTCAGGCGGA 19073 Score = 87.8 bits (96), Expect = 4e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 5022 CAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATGGTAAA 5081 ||||| | || || || |||||||||| | |||| |||||||||||||||||||||||| Sbjct 47165 CAATATTTAGCTCCTTATACAGGTTGTGCTTTAGGTGAATATTTTAGAGATAATGGTAAA 47224 Query 5082 CATGCTTTAATCATCTACGATGATTTAAGTAAACAA 5117 || || |||| | || ||||||||| |||||| Sbjct 47225 CACGCCGTAATTTTTTATGATGATTTATCAAAACAA 47260 >seq296 Length=213998 Score = 122 bits (134), Expect = 2e-22 Identities = 162/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| | || || || || |||| ||||| || | | || Sbjct 98307 ACGAAGACGGAGCACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGT 98366 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| || |||||||| || || || ||||| || ||||| || Sbjct 98367 GCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGAATTCC 98426 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| |||||||| ||||| || || ||| |||| || | || || || | Sbjct 98427 TTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCAATGCTGTCCGATGGCTCGACATCGAG 98486 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 |||||| ||||||||||||| ||| || | || | ||||| || Sbjct 98487 CGTGATGGTCTTGCCCGTCAGAGTCTTCACAAAGATCTGCATCTT 98531 >seq235 Length=453453 Score = 102 bits (112), Expect = 2e-16 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || || || |||||||| ||||| ||||| | ||| || || || || ||||| |||||| Sbjct 11176 CCGTCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGATCTGGAGGAATGCCTTCC 11235 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| |||||||| ||||| || || || | ||| || | || ||||| ||||| Sbjct 11236 TTGTCCTGGATCTTCTGCTTGACGTTGTCAATCGAGTCCGAAGGCTCGACGTCCAACGTA 11295 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || |||||||| || | || || | ||| | ||||| || Sbjct 11296 ATGGTCTTGCCGGTGAGTGTCTTGACGAAGATCTGCATCTT 11336 Score = 91.5 bits (100), Expect = 4e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 225589 CGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATG 225648 || || || || || |||||||| |||||||| |||||||| |||||||| || || Sbjct 29427 CGCTGCTGATCTGGAGGAATACCCTCCTTGTCCTGGATCTTCTGCTTCACGTTGTCAATC 29368 Query 225649 GTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACT 225708 | ||| || | || ||||| | ||||||||||||||| ||||| || || | ||| | Sbjct 29367 GAGTCCGAAGGCTCGACGTCAAGCGTGATCGTCTTGCCGGTCAATGTCTTCACGAAGATC 29308 Query 225709 TGCATTTT 225716 ||||| || Sbjct 29307 TGCATCTT 29300 >seq237 Length=1081 Score = 100 bits (110), Expect = 7e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 371365 AATGGTAATTTATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAG 371424 || |||||| |||| | | ||||||||| ||||||||||| | || || | |||||| Sbjct 944 AAAGGTAATCTATGAAAACTTAAACCAGGAGCTCTCATATTATAAATAGTTGAAATAAAA 1003 Query 371425 TTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCG 371484 || || || |||| | ||||| ||||||| | |||||||||||| || |||||||| Sbjct 1004 TTAATTGCACCTAATAATGAAGAGATACCTGTTAAATGTAAACTAAAAATAGCTAAATCT 1063 Query 371485 ACGGAACCGCCGGAGTGA 371502 || ||| || |||||| Sbjct 1064 ACAGAAGGACCTGAGTGA 1081 Score = 98.7 bits (108), Expect = 2e-15 Identities = 85/104 (82%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| |||||||| ||||| || |||||||||||||| | | ||||| ||||| || || Sbjct 766 TTCCGGATGACCGAAAAACCAAAATAAATGTTGATATAATACTGGATCACCTCCACCAGA 825 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 |||||| |||| |||||| ||||||||||||||||| |||| Sbjct 826 AGGATCATAAAAAGAAGTATTTAAATTTCTATCAGTTAATAACA 869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192526005035960