Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F002073175.1_202017-03-28] 340 sequences; 36,794,057 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq296 172 1e-37 seq25 118 2e-21 seq235 109 1e-18 seq69 104 5e-17 seq294 98.7 2e-15 seq91 96.9 7e-15 >seq296 Length=213998 Score = 172 bits (190), Expect = 1e-37 Identities = 179/232 (77%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || |||| || || || || || |||||||||||||| | Sbjct 98301 ACCACCACGAAGACGGAGCACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCCGA 98360 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||||| ||||| || || || ||||| ||||||| ||| || ||||| || Sbjct 98361 GAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGTGG 98420 Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 ||| || |||||||| |||||||| ||| || ||| | || || ||||||| | |||| Sbjct 98421 AATTCCTTCCTTGTCCTGGATCTTCTGC-TTGACGTTGTCAATGCTGTCCGATGGCTCGA 98479 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 | ||||| ||||| ||||| ||||||| |||||| || || |||||||| || Sbjct 98480 CATCGAGCGTGATGGTCTTGCCCGTCAGAGTCTTCACAAAGATCTGCATCTT 98531 >seq25 Length=728326 Score = 118 bits (130), Expect = 2e-21 Identities = 299/448 (67%), Gaps = 10/448 (2%) Strand=Plus/Minus Query 273617 CGTAGACCAACCGGTGCCAATACCGGAAGAACCATTCACCAGAATACTCGGGATAATTGG 273676 ||| ||||| || || || || || || || |||| ||| | | || | ||||| Sbjct 453638 CGTCGACCACCCAGTACCGATGCCCTCTGAGCCGTTCAACAGCAGCATGGGCAAGATTGG 453579 Query 273677 GACATAATATTCGGGCTCAATTTTATCACCATCGTCGTAAAGGTACTTCAACAAAGCATC 273736 ||||| || | ||||| | | | ||||||||||| | ||| ||| ||| || || Sbjct 453578 TACATAGTAGTGAGGCTCCACTGGGTAACCATCGTCGTCGACGTAGCTCAGCAACGCGTC 453519 Query 273737 ATCCGTATCAACGAAAACCTTTCGCGTCTGAGGATTCAGTTTCGTGAAAATGTACCTGGC 273796 || || ||| | | | ||||| | | || |||||| ||||| | | Sbjct 453518 GTCGTCTTCTGGGAACAGCATACGCGTGTACTTCTGCAAGAACGTGAAGATGTAACGAGG 453459 Query 273797 ACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGACCCTC-GGGCAGTAGCC 273855 ||||||| ||||| ||||| || || | || ||| || |||||| ||| || ||| Sbjct 453458 ACTCGCAGCATCCTTACCACCCTGAAGTCGCGTACCGAATTGACCCGAAGGGTAG-AGCA 453400 Query 273856 AGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACGATAGTCCCCTGAAGGG 273915 | | |||||| ||| ||||| ||||| ||||||||||| || || ||||| | Sbjct 453399 ATGGCAAGTTGTTCGCACCAACGTAGTCCTGCGCCATATTCACAATTGTTGAGTGAAGTG 453340 Query 273916 ATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATA-TAACCACTGAACTGAGCAACC 273974 || | || |||||||| || || | || || | | | ||||| || ||| || ||| Sbjct 453339 ATGCTTCACCGTGGTGGTATGCCGTATGCTC-ACTACAGTAACCCGCGAGCTGCGCCACC 453281 Query 273975 TTCACATCGCTCGTCAAGTTTCGCTTGA---ATGCGGAATACAACACCTTCCGCTGCGAG 274031 || || || |||| | ||||||| || | ||| |||||||||| ||||| || Sbjct 453280 TTGACTTCCTTCGTGAGTTTTCGCTCGAGACAAGCG---AACAACACCTTACGCTGTGAT 453224 Query 274032 GGCTTGAACCCATCAACGACCGATGGAA 274059 ||||| ||||||| || ||||||| Sbjct 453223 ACCTTGAGACCATCAATAACGGATGGAA 453196 >seq235 Length=453453 Score = 109 bits (120), Expect = 1e-18 Identities = 94/114 (82%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 282990 GGAATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTC 283048 ||||||||||||||||| |||||||| ||||| ||| | || || | |||||||| || Sbjct 29412 GGAATACCCTCCTTGTCCTGGATCTTCTGCTTC-ACGTTGTCAATCGAGTCCGAAGGCTC 29354 Query 283049 GACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||| || || ||||||||||| || ||||| ||||| ||||| |||||||| || Sbjct 29353 GACGTCAAGCGTGATCGTCTTGCCGGTCAATGTCTTCACGAAGATCTGCATCTT 29300 Score = 107 bits (118), Expect = 4e-18 Identities = 128/171 (75%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || ||||| ||||| || || || || ||||||||||| || || || || ||| Sbjct 11167 AGGGTACGGCCGTCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGATCTGGAGGA 11226 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || |||||||| |||||||| ||| || ||| | || || | |||||||| ||||| Sbjct 11227 ATGCCTTCCTTGTCCTGGATCTTCTGC-TTGACGTTGTCAATCGAGTCCGAAGGCTCGAC 11285 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || | || || ||||| || || | ||||| ||||| |||||||| || Sbjct 11286 GTCCAACGTAATGGTCTTGCCGGTGAGTGTCTTGACGAAGATCTGCATCTT 11336 >seq69 Length=689117 Score = 104 bits (114), Expect = 5e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 316154 CAAGTGATTCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCA 316213 |||| |||| ||||| |||||||| ||||||| ||||||||||| |||| || | Sbjct 383190 CAAGCAATTCCTTGTCCTCACCGGACTGGAAACGCCACTGGATGTACTGGTTGGCCGAGA 383249 Query 316214 TGTCAAGATGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATAT 316273 |||| | || || || |||||||||||||||||||| || |||||||| | ||| | Sbjct 383250 TGTCCAAGTGCTCTTCAATGTGGTGGAAAGCGTGCTGGGCGACGTAAGCGAAACGAAGGG 383309 Query 316274 TTGGATGCTTCCAAACGCTACC 316295 || |||||||| || |||| Sbjct 383310 CAGGGTGCTTCCACACAGTACC 383331 Score = 95.1 bits (104), Expect = 3e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 316986 GAGGTCATGCTCAACATATGCAGTTTTCAGAATATCCTTCGTCGGGAACCCTTCCAACTG 317045 ||||| |||||||| | | || || || ||||| | | ||||| || || | ||| Sbjct 384013 GAGGTTGTGCTCAACGAACACGGTCTTGAGCTCATCCTGCTTTGGGAAGCCCTCGAGCTG 384072 Query 317046 ACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCACCATTGGGGCCGCAAAGACC 317105 ||| ||| || || | ||| || |||||||| ||| ||| || || || || ||||| Sbjct 384073 ACCCTTCGAGATGGCACGCATGAGCGTCGACTTACCACAACCGTTTGGACCACAGAGACC 384132 Query 317106 ATACCGATTTCCCTTCTTCAGATTAAAACGGGTGTTGTTCAGAAGAATCTTACCACCATA 317165 || || | || ||| ||| || ||| | |||||| || | ||| ||||||| || Sbjct 384133 GTAACGGTGACCACGCTTGAGACGAAGACGAGCGTTGTTGAGCAAGATCATACCACCGTA 384192 Query 317166 TGCCAGAGAGAACTCACAATCACACAGGTC 317195 || || ||||||||||| | ||| || || Sbjct 384193 AGCGAGCGAGAACTCACAGTTACAGAGATC 384222 >seq294 Length=225135 Score = 98.7 bits (108), Expect = 2e-15 Identities = 119/160 (74%), Gaps = 9/160 (6%) Strand=Plus/Plus Query 312485 GCGCCCCCACTTGACACCGTTGACAATTGACTCGAAGTCATCGT---TCAGGATAACGAT 312541 ||| |||||||||| | | | ||| || ||| ||||| |||| ||||||| ||| Sbjct 135909 GCGTCCCCACTTGATAGCCTGGACGATGGACGTGAAGTTGTCGTCCATCAGGAT---GAT 135965 Query 312542 ATCGGCTGCTTCCTTTGCAATGTCTGTACCACTC---CCCATTGCACACCCGACGTCTGC 312598 ||||| ||| ||||| || | | |||||||||| ||||| || | || |||| ||| Sbjct 135966 ATCGGATGCGTCCTTGGCGACGGCTGTACCACTGATACCCATGGCGAAGCCAACGTGTGC 136025 Query 312599 TTCCTTAAGAGCCGGGGCGTCGTTAGCACCATCGCCACTC 312638 || ||| || || ||||||||||| | |||||| ||| || Sbjct 136026 TTTCTTTAGCGCTGGGGCGTCGTTCGTACCATCACCAGTC 136065 >seq91 Length=645019 Score = 96.9 bits (106), Expect = 7e-15 Identities = 280/431 (65%), Gaps = 0/431 (0%) Strand=Plus/Minus Query 273621 GACCAACCGGTGCCAATACCGGAAGAACCATTCACCAGAATACTCGGGATAATTGGGACA 273680 |||||||| || |||||||| | ||| || || |||| | ||||| | ||| ||| Sbjct 327947 GACCAACCAGTACCAATACCTTCACTACCGTTGACAAGAACCATTGGGATGACTGGAACA 327888 Query 273681 TAATATTCGGGCTCAATTTTATCACCATCGTCGTAAAGGTACTTCAACAAAGCATCATCC 273740 || | || || || || | |||||| |||| |||||| || | | | | | |||| Sbjct 327887 TACCACTCAGGTTCGATCGATTGACCATCATCGTCAAGGTAGTTGAGAACATCGTTATCC 327828 Query 273741 GTATCAACGAAAACCTTTCGCGTCTGAGGATTCAGTTTCGTGAAAATGTACCTGGCACTC 273800 | |||| | ||| | |||| | || || ||||| ||||| | | || Sbjct 327827 AGTGGATCGAAGAGGCATCGAGCAAGAGGTTCGAGGTTGGTGAAGATGTAACGAGGGCTT 327768 Query 273801 GCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGACCCTCGGGCAGTAGCCAGTTT 273860 ||| ||||||||| || || | || ||| |||||||| | ||| ||| | || Sbjct 327767 GCACTGTCCTTGCCTCCCATCAATCGCGTACCGAACTGACCGTTTGGCGAGAGCAAATTG 327708 Query 273861 ATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACGATAGTCCCCTGAAGGGATACC 273920 ||||||||||| || ||| | || || ||||| || || || || || | | | || Sbjct 327707 ATGTTGTTGCTGCCCACGAAGTCTTGCGCCATGTTGACAATTGTACCGTATATACTTGCC 327648 Query 273921 TCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATAACCACTGAACTGAGCAACCTTCACA 273980 || ||||| || || || || || | || || || | | || || ||||| | Sbjct 327647 TCACCGTGATGGTAAGCCGAATGCTCCGAGACGTATCCTCCAAGTTGGGCGACCTTGATT 327588 Query 273981 TCGCTCGTCAAGTTTCGCTTGAATGCGGAATACAACACCTTCCGCTGCGAGGGCTTGAAC 274040 || || ||| |||||| |||| | | | |||||| || || || ||||| || Sbjct 327587 TCCGTCTTCAGGTTTCGTTTGAGACAACAGAAGAGCACCTTACGTTGAGATGGCTTAAAA 327528 Query 274041 CCATCAACGAC 274051 ||||| || || Sbjct 327527 CCATCGACAAC 327517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046734640142360