Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F002073175.1_202017-03-28] 340 sequences; 36,794,057 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq296 131 1e-25 seq235 122 6e-23 seq47 91.5 1e-13 >seq296 Length=213998 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| ||| | || |||||| ||||||||||| || | ||| ||| |||| || Sbjct 98319 CACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTC 98378 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| ||||| ||||||| ||||||||| |||| || | |||||||| ||| Sbjct 98379 GAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGAATTCCTTCCTTGTCCTG 98438 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||||||||| | | | ||| |||| | | || || || | ||| || ||||| Sbjct 98439 GATCTTCTGCTTGACGTTGTCAATGCTGTCCGATGGCTCGACATCGAGCGTGATGGTCTT 98498 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || |||||||| ||||| ||||| Sbjct 98499 GCCCGTCAGAGTCTTCACAAAGATCTGCAT 98528 >seq235 Length=453453 Score = 122 bits (134), Expect = 6e-23 Identities = 121/157 (77%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 44181 CGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCT 44240 |||| || |||||||| || ||||||||||| ||||||||||||| ||| | ||||||| Sbjct 11177 CGTCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGATCTGGAGGAATGCCTTCCT 11236 Query 44241 TTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAA 44300 | ||| ||||||||||| | | | || | ||| | | || || |||| ||||| Sbjct 11237 TGTCCTGGATCTTCTGCTTGACGTTGTCAATCGAGTCCGAAGGCTCGACGTCCAACGTAA 11296 Query 44301 TCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||| || ||||| ||||| |||||||| ||||| Sbjct 11297 TGGTCTTGCCGGTGAGTGTCTTGACGAAGATCTGCAT 11333 Score = 82.4 bits (90), Expect = 5e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 44213 CGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATG 44272 ||||||||||||| ||| | ||| ||||| ||| ||||||||||||| | | || Sbjct 29427 CGCTGCTGATCTGGAGGAATACCCTCCTTGTCCTGGATCTTCTGCTTCACGTTGTCAATC 29368 Query 44273 GTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATT 44332 | ||| | | || || || | ||| |||||||| || || | |||||||||||||| Sbjct 29367 GAGTCCGAAGGCTCGACGTCAAGCGTGATCGTCTTGCCGGTCAATGTCTTCACGAAGATC 29308 Query 44333 TGCAT 44337 ||||| Sbjct 29307 TGCAT 29303 >seq47 Length=722260 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/113 (79%), Gaps = 4/113 (4%) Strand=Plus/Plus Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGAT 44284 || || ||||||||| ||| ||||||||||| || ||| | ||| |||||| | | Sbjct 455534 AGACATACCTTCCTTGTCCTGGATCTTCTGCTTGACATTGT--CAATGCTGTCGGATGGT 455591 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || |||| || || ||||| ||||||||||||||||||||||| ||||| Sbjct 455592 TCGACATCCAGGGTGATGGTCTTCCCCGTGAGGGTCTTCACGAAGATCTGCAT 455644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359988908289780