Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq549 111 3e-19 seq561 104 5e-17 seq577 95.1 3e-14 >seq549 Length=149600 Score = 111 bits (122), Expect = 3e-19 Identities = 300/452 (66%), Gaps = 8/452 (2%) Strand=Plus/Plus Query 230171 CGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTT 230230 ||||||| |||||| ||||||||| | |||| ||||| | || || || | Sbjct 88039 CGTTTGCTGAGCGTGTCGTCGCCTTCGCTGCCATTGAGGGTATCTTCTTCTCGGGTTCGT 88098 Query 230231 TCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACG 230290 ||||| | |||| ||||| ||| ||| | |||||||||||| | | || |||| Sbjct 88099 TCTGCTCGGTCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGCCTCAGCTTCTCGAACG 88158 Query 230291 AGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTA-TGTATTCAAAG 230349 || | |||||||| || || |||||||| | |||| | |||| | || ||| Sbjct 88159 AGCTTATCAGTCGTGATGAAGGTCTCCACTGTGACTTCGCCT-GCTTGCTCTACAACAAG 88217 Query 230350 CTCCAGAACAAGCTACCAT--TCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGAAA 230407 || ||| || ||| ||| || || | | || | | || || || | Sbjct 88218 CTTGTTAACCGTCTCCCAGAGTCGCGAA--TCCACGAGATTGTCAGTGATGCCGTCACGA 88275 Query 230408 ACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGAA 230466 ||| ||||||||| | ||| | | ||| |||| ||||| || |||||| | | Sbjct 88276 TCGAGAAGGAGTTCGTCAAGGACTCGCTCCCA-GTCGAGCTTATCGGTATGAACTCGGCG 88334 Query 230467 CTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAG 230526 || ||| | ||||||||||| ||||| || || || || | || |||||| | | Sbjct 88335 CTCATGTGCCAGTACATCGAGTTCGTCGCTGATCGTCTTCTCCACGCTCTTGGTGTCTCG 88394 Query 230527 AAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAG 230586 || | |||||| | ||||| |||| | ||||| | || ||||| || || ||| Sbjct 88395 AAGATCTACAACGCGTCCAACCCATTTGACTGGATGGATATGATCTCGCTCCAGGGCAAG 88454 Query 230587 ACCAACTTCTTCGAAAAGCGTGTCAGTGACTA 230618 |||||||||||||| |||||||| |||| || Sbjct 88455 ACCAACTTCTTCGAGAAGCGTGTTGGTGAATA 88486 >seq561 Length=342854 Score = 104 bits (114), Expect = 5e-17 Identities = 142/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 318991 TCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGA 319050 || ||||| |||||||| ||||||| ||||| |||||||||| | ||||| | Sbjct 172346 TCCTTGTCCTCACCGGACTGGAAACGCCACTGGATGTACTGGTTGGCCGAGATGTCCAAG 172287 Query 319051 TGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 319110 || || || |||||||||||||| ||||| || |||||||| | ||| | |||||| Sbjct 172286 TGCTCTTCAATGTGGTGGAAAGCGTGCTGGGCGACGTAAGCGAAACGAAGGGCAGGATGC 172227 Query 319111 TTCCAAACACTA-CCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCT 319169 ||||| || || |||| | |||| || | || || || | || ||| || | ||| Sbjct 172226 TTCCACACGGTACCCGACGTTGGC-TCGACTTCACCAGTCAACATCTTGATCATGGTCGA 172168 Query 319170 TTTCCCCGCACCGTTT 319185 || || ||||||||| Sbjct 172167 CTTACCAGCACCGTTT 172152 >seq577 Length=114232 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| | ||||||| | |||||||||||||||||| Sbjct 114156 GCCCGTCTAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGC 114215 Query 165770 CCCACGATGGGC 165781 |||||| |||| Sbjct 114216 CCCACGGGGGGC 114227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057809863835090