Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq549 125 8e-24 >seq549 Length=149600 Score = 125 bits (138), Expect = 8e-24 Identities = 304/454 (67%), Gaps = 11/454 (2%) Strand=Plus/Minus Query 24131 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 24190 ||| || ||||| || ||||| ||||| || || | ||| || | ||||| || || | Sbjct 88205 CAAGCAGGCGAAGTCACAGTGGAGACCTTCATCACGACTGATAAGCTCGTTCGAGAAGCT 88146 Query 24191 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAA 24249 ||| || ||||| || |||||||| || ||||| || | || ||| || || || || | Sbjct 88145 GAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGACCGA-GCAGAACGAACCCGAGA 88087 Query 24250 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCAT 24309 |||| || || || | || || ||||| | | | || || | ||||| | || | Sbjct 88086 AGAAGATACCCTCAATGGCAGCGAAGGCGACGACACGCTCAGCAAACGCGGCGTTCTC-T 88028 Query 24310 GTATC----CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 24365 | || || | ||||| | ||||||||| | || || || |||||||| || Sbjct 88027 GAGTCACACCAGCGGAGCGCCCAGTTGGCCTTCTTCTGCACGCATGGGATTGTCTCAATG 87968 Query 24366 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 24425 || || | | ||| || || ||| || | || || |||||||| || Sbjct 87967 GCGCGGAACAAGTGGTTCTTCTCGGCGGCATCCTTGATGTACGTGTCAATCAACAGCGAG 87908 Query 24426 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCG 24485 ||||||||||| || ||||| |||||||| || || || |||||||| || | || || Sbjct 87907 TACATTTCCGAGTGGATGTTCTCAATGGCAATCTGGAAGCCGTAGAAGCAGCGGGCTTCA 87848 Query 24486 GTAATCTGTACTTCTATACAAAATCGTTC--TGCTAAATTTTCATTCACTATTCCGTCAC 24543 | | ||| ||||| | | || |||| || | || || ||||| || || |||| Sbjct 87847 GGCACCTGGACTTCGTTGCTGAA--GTTCATGGCAAGGTTCTCGTTCACAATACCATCAC 87790 Query 24544 TGGCTGCAAAAAACGCCAATACATGTTTTATAAA 24577 |||| || || ||||| | || || || || || Sbjct 87789 TGGCAGCGAAGAACGCGAGCACGTGCTTGATGAA 87756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593713859354640