Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq549 343 2e-89 seq1035 129 6e-25 seq148 114 1e-20 seq135 82.4 8e-11 >seq549 Length=149600 Score = 343 bits (380), Expect = 2e-89 Identities = 595/857 (69%), Gaps = 6/857 (1%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| ||||| ||||||||||| ||| |||||| | ||||| || || | ||| Sbjct 87588 GAGCCTCTGCTTCGCGAGAACCCAAACCGATTCGTGCTCTTCCCGATCCAGGAGAAGGAG 87647 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCT- 116694 || ||| |||||||| ||||| || || |||||||| ||||||||| | || || Sbjct 87648 ATCTGGGATATGTACAAGAAGGCGGAAGCCAGCTTCTGGACGGTCGAGGAGATCGATCTT 87707 Query 116695 GTCCAAGGACACGAGCGACTGGGAGCG-CTTGAACGACAACGAGCGCCATTTCATCAAGC 116753 || || | | | || |||||| ||| ||||| |||||| ||||| || |||||||||| Sbjct 87708 GTGCACGACCTCAAG-GACTGG-AGCAACTTGACCGACAATGAGCGTCACTTCATCAAGC 87765 Query 116754 ACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTT 116813 ||||||| || || ||||| ||||| || || || || |||||||| || | | | | Sbjct 87766 ACGTGCTCGCGTTCTTCGCTGCCAGTGATGGTATTGTGAACGAGAACCTTGCCATGAACT 87825 Query 116814 TCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGG 116873 || | || || |||||| | || || || |||||||||||||| ||||| ||||| | Sbjct 87826 TCAGCAACGAAGTCCAGGTGCCTGAAGCCCGCTGCTTCTACGGCTTCCAGATTGCCATTG 87885 Query 116874 AGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGG 116933 ||||| | |||||||||||||| ||| | || ||||||||| | | | | | Sbjct 87886 AGAACATCCACTCGGAAATGTACTCGCTGTTGATTGACACGTACATCAAGGATGCCGCCG 87945 Query 116934 AGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGT 116993 ||||| || ||||| |||||| ||||| || || ||||| | |||||||| | | Sbjct 87946 AGAAGAACCACTTGTTCCGCGCCATTGAGACAATCCCATGCGTGCAGAAGAAGGCCAACT 88005 Query 116994 GGGCGCTGCGCTGGATCGCCGGCAGAG-AGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTC 117052 ||||||| |||||| | | ||||| | ||||| || | ||||| | || |||||| Sbjct 88006 GGGCGCTCCGCTGGTGTGAC-TCAGAGAACGCCGCGTTTGCTGAGCGTGTCGTCGCCTTC 88064 Query 117053 GCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAA 117112 || ||| | ||||| ||||||| ||||| ||| | | | || ||||||||||| Sbjct 88065 GCTGCCATTGAGGGTATCTTCTTCTCGGGTTCGTTCTGCTCGGTCTTCTGGCTCAAGAAG 88124 Query 117113 CGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTG 117172 || || |||||||| ||||| | ||| |||||||| ||| | || || ||||| Sbjct 88125 CGTGGTCTCATGCCTGGCCTCAGCTTCTCGAACGAGCTTATCAGTCGTGATGAAGGTCTC 88184 Query 117173 CATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGC 117232 || || ||||| ||||| ||||| | ||| | | || | || | | | |||| Sbjct 88185 CACTGTGACTTCGCCTGCTTGCTCTACAACAAGCTTGTTAACCGTCTCCCAGAGTCGCGA 88244 Query 117233 GTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTG 117292 || ||||| |||| || || ||| | |||||| || ||| ||| || |||| Sbjct 88245 ATCCACGAGATTGTCAGTGATGCCGTCACGATCGAGAAGGAGTTCGTCAAGGACTCGCTC 88304 Query 117293 CCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCC 117352 || || || | || | || | | |||| || ||||||||||||||||| Sbjct 88305 CCAGTCGAGCTTATCGGTATGAACTCGGCGCTCATGTGCCAGTACATCGAGTTCGTCGCT 88364 Query 117353 GACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGCTGGAC 117412 || | || || | || || | | | | ||| ||||||| || ||||||| | ||| Sbjct 88365 GATCGTCTTCTCCACGCTCTTGGTGTCTCGAAGATCTACAACGCGTCCAACCCATTTGAC 88424 Query 117413 TTTATGAACCTCATCTC 117429 | ||| | | ||||| Sbjct 88425 TGGATGGATATGATCTC 88441 >seq1035 Length=208423 Score = 129 bits (142), Expect = 6e-25 Identities = 157/209 (75%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || || || || || || |||||||| |||||||| |||| ||||| || Sbjct 98578 AAAGATGCAGATCTTTGTGAAGACTCTGACGGGCAAGACCATCACGCTCGATGTCGA-GC 98520 Query 40746 CACCG-ACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCG 40803 || || ||||| | | |||| ||||| | || || | ||||| || || || || | Sbjct 98519 CATCGGACAGCATTGACAACG-TCAAGCAGAAGATCCAGGACAAGGAAGGAATTCCACCA 98461 Query 40804 GACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 40863 |||||||| || || |||| ||| ||||| ||||| || || | ||||| ||| ||| Sbjct 98460 GACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTCTCGGAC 98401 Query 40864 TACAACATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||||||||| | || |||| Sbjct 98400 TACAACATCCAGAAGGAGTCGACCTTGCA 98372 >seq148 Length=18536 Score = 114 bits (126), Expect = 1e-20 Identities = 159/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || ||| | || ||||| ||||| || |||||||||| | Sbjct 323 AAGATGCAGATCTTCGTGAAGACGTTGACCGGCAAGACCATTACTCTCGACGTCGAGCCT 264 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | ||| | | |||| ||||| | || || | ||||| || ||||| || | || Sbjct 263 TCGGACTCGATCGACAACG-TCAAGCAGAAGATCCAGGACAAGGAAGGCATTCCTCCAGA 205 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||| ||| | || | ||| ||||| ||||| || |||| || |||||| ||||| Sbjct 204 TCAGCAGCGATTGATTTTCGCTGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCGGACTA 145 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 |||||||||||||||| | ||| |||| | ||| | ||| Sbjct 144 CAACATCCAGAAGGAGTCTACGTTGCACTTGGTGCTCCGC 105 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || ||||| ||||| ||||| || | |||||||| | Sbjct 18292 AAGATGCAGATCTTCGTCAAGACACTCACCGGCAAGACCATTACGTTGGACGTCGAGCCT 18351 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | ||| | | | ||||| | || || | ||||| || || || || | || Sbjct 18352 TCAGACTCGATCGACAATGTCAAGCAGAAGATCCAGGACAAGGAAGGTATTCCTCCAGAT 18411 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || | |||| || || || ||||| || |||| || |||||| |||||| Sbjct 18412 CAGCAGCGTTTGATCTTTGCTGGTAAGCAGCTCGAGGACGGCCGTACCCTCTCGGACTAC 18471 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||||| | ||| |||| | ||| | |||||| | || || Sbjct 18472 AACATCCAGAAGGAGTCTACGTTGCACTTGGTGCTCCGCTTGCGTGGTGG 18521 >seq135 Length=10251 Score = 82.4 bits (90), Expect = 8e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 40804 GACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 40863 || ||||| ||| | || | ||| ||||| ||||| || |||| || |||||| ||| Sbjct 10248 GATCAGCAGCGATTGATTTTCGCTGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCGGAC 10189 Query 40864 TACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||||||| | ||| |||| | ||| ||||| | | ||||| Sbjct 10188 TACAACATCCAGAAGGAGTCTACGTTGCACTTGGTGCTGCGCCTTCGTGGCGG 10136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515212482829680