Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq148 127 1e-24 seq1035 118 7e-22 seq135 89.7 3e-13 >seq148 Length=18536 Score = 127 bits (140), Expect = 1e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| || ||| || ||||| ||||||||||| || || |||| |||| Sbjct 109 AGCACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGGCCGTCC 168 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||||||| |||||||| | |||||||| || || | || |||||||| Sbjct 169 TCGAGCTGCTTGCCAGCGAAAATCAATCGCTGCTGATCTGGAGGAATGCCTTCCTTGTCC 228 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||||| | | | | ||||| || | | |||||||| | || ||||| Sbjct 229 TGGATCTTCTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCGACGTCGAGAGTAATGGTC 288 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 |||||||| | || ||||| |||||||||||| Sbjct 289 TTGCCGGTCAACGTCTTCACGAAGATCTGCATC 321 Score = 127 bits (140), Expect = 1e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| || ||| || ||||| ||||||||||| || || |||| |||| Sbjct 18506 AGCACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGGCCGTCC 18447 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || || || || | |||||||| || || | | |||||||| Sbjct 18446 TCGAGCTGCTTACCAGCAAAGATCAAACGCTGCTGATCTGGAGGAATACCTTCCTTGTCC 18387 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||||| | || | | ||||| || | | |||||||||| ||| ||||| Sbjct 18386 TGGATCTTCTGCTTGACATTGTCGATCGAGTCTGAAGGCTCGACGTCCAACGTAATGGTC 18327 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||||||||| || || || |||||||||||| Sbjct 18326 TTGCCGGTGAGTGTCTTGACGAAGATCTGCATC 18294 >seq1035 Length=208423 Score = 118 bits (130), Expect = 7e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| || || || ||||| ||||||||||| || ||| ||| | || Sbjct 98363 AGCACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCATCC 98422 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||||||| ||||| || || ||||||||||| || | | |||||||| Sbjct 98423 TCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGAATTCCTTCCTTGTCC 98482 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||||| | | | | || || | | ||||| || | ||||||||| Sbjct 98483 TGGATCTTCTGCTTGACGTTGTCAATGCTGTCCGATGGCTCGACATCGAGCGTGATGGTC 98542 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||| || ||||| |||||||||||||||||| Sbjct 98543 TTGCCCGTCAGAGTCTTCACAAAGATCTGCATC 98575 >seq135 Length=10251 Score = 89.7 bits (98), Expect = 3e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 |||||| || || | |||||||| ||| || ||| || ||||| ||||||||||| || Sbjct 10135 TCCGCCACGAAGGCGCAGCACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAGTCCGA 10194 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC 34275 || |||| |||| || | ||||||||| |||||||| | |||||||| || Sbjct 10195 GAGGGTACGGCCGTCCTCGAGCTGCTTGCCAGCGAAAATCAATCGCTGCTGATC 10248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323067893250080