Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq539 116 8e-21 seq1011 111 3e-19 seq278 89.7 1e-12 >seq539 Length=78641 Score = 116 bits (128), Expect = 8e-21 Identities = 265/387 (68%), Gaps = 20/387 (5%) Strand=Plus/Minus Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060 || || ||| |||| ||| |||| ||||| || || ||||||||||| || ||| | || Sbjct 31056 CTCCCGCATCTGCTCTTCTACGGGCCTCCAGGCACGGGCAAGACGTCGACGATCGTCGCC 30997 Query 254061 CTGGCCCGAACCCTGTTGGG-CGAGGGGAACATGAG--AGAGCG--CGTGC--TCGAGCT 254113 |||| || |||| || | || || | | ||| || ||| | ||| | Sbjct 30996 ATGGCGCGTCAGTTGTTTGGTCCAG----ACTTCCGCAAGAACGGCCGTTTCTTGGAGTT 30941 Query 254114 GAACGCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGA-CTTTCTCCA 254172 ||||||||| || || || || | | || || ||||| || |||||| |||| || Sbjct 30940 GAACGCTTCCGATGATCGTGGTATCAAAGTGGTGCGCGAGAAAGTCAAGAGCTTTGCGCA 30881 Query 254173 AGATGTCGATTTCGTCGTTCCAACCCGGCTGTCCGCCTTTCAAGCTCGTGATCCTGGACG 254232 || || |||| || | ||| ||||| || || |||||| || | | ||||| | Sbjct 30880 AGGTG-CGATCA-GTAGCTCCG--CCGGCATGCCTCCGTTCAAGATCATCGTGCTGGATG 30825 Query 254233 AGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACGCACT 254292 | || ||| | ||||| | ||||||||||| || || || || | |||||||| ||| Sbjct 30824 AAGCCGACTCGATGACTGGTGACGCGCAGTCGGCGCTGCGTCGCATGATGGAGAACTACT 30765 Query 254293 CCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGT--GTCGAAGATCATCGCCCCGCT 254350 || || ||||| |||||||| | || |||||||| |||| ||||||| || | Sbjct 30764 CCAAGGTCACGCGCTTTTGCCTCATTTGTAACTACGTGAGTCG--TATCATCGAGCCAAT 30707 Query 254351 GGCTTCTCGGTGCGCCAAGTTTCGATT 254377 || || || || |||||||| || || Sbjct 30706 TGCCTCGCGTTGTGCCAAGTTCCGCTT 30680 >seq1011 Length=2310 Score = 111 bits (122), Expect = 3e-19 Identities = 160/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 248417 CCATGTACATCACCAAGCGGGACGGGCGCAAAGAAAACGTTCTCTTCGACAAAATCTCGG 248476 |||||||| | |||||| ||||| ||||| ||| |||| |||||||| ||| ||| Sbjct 223 CCATGTACGTGCTCAAGCGCGACGGACGCAAGGAAGACGTCAAGTTCGACAAGATCACGG 164 Query 248477 CGCGCATCAAGAAGCTCTGTTATGGTCTGGAACCCAACTTCGTCGATCATGTGGCCATCG 248536 |||| ||||| |||||||| ||||||||| | | ||| |||||| | | ||| Sbjct 163 CGCGTATCAACAAGCTCTGCTATGGTCTGAACGCTGACTACGTCGACCCAATTAAGATCT 104 Query 248537 CCCAGAAAGTTATTTCGGGCGTCTACACCGGAGTAACAACGACAGAACTGGACACCTTAG 248596 | ||||| || | | || |||||| | || || || ||| | || |||| || | Sbjct 103 CGCAGAAGGTGGTCGCTGGTGTCTACCCTGGTGTCACGACGTCCGAGTTGGATGAGTTGG 44 Query 248597 CTGCGGAGACGGCGGCGTACATGGCGATTGCA-CACCCCGACT 248638 | || ||||||||||||||| |||| ||| ||||| |||| Sbjct 43 CGGCCGAGACGGCGGCGTACTGTGCGA-CGCAGCACCCTGACT 2 >seq278 Length=49581 Score = 89.7 bits (98), Expect = 1e-12 Identities = 155/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 248417 CCATGTACATCACCAAGCGGGACGGGCGCAAAGAAAACGTTCTCTTCGACAAAATCTCGG 248476 |||||||| | |||||| ||||| || | ||| | || ||||||||| ||| | | Sbjct 49359 CCATGTACGTGCTCAAGCGAGACGGACGTCAGGAAGATGTCTCCTTCGACAAGATCACAG 49418 Query 248477 CGCGCATCAAGAAGCTCTGTTATGGTCTGGAACCCAACTTCGTCGATCATGTGGCCATCG 248536 | |||||| |||||||| ||||||||| | | ||| ||| || | || ||| Sbjct 49419 CTCGCATCTCCAAGCTCTGCTATGGTCTGAACGCTGACTACGTTGACCCAGTCAAGATCA 49478 Query 248537 CCCAGAAAGTTATTTCGGGCGTCTACACCGGAGTAACAACGACAGAACTGGACACCTTAG 248596 | ||||| || | | || |||||| | || || || ||| | || |||| || | Sbjct 49479 CACAGAAGGTGGTCGCTGGTGTCTACCCTGGTGTCACGACGTCCGAGTTGGATGAGTTGG 49538 Query 248597 CTGCGGAGACGGCGGCGTACATGGCGATTGCA-CACCCCGACT 248638 | || ||||||||||||||| |||| ||| ||||| |||| Sbjct 49539 CGGCCGAGACGGCGGCGTACTGTGCGA-CGCAGCACCCTGACT 49580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073752050789824