Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1035 122 7e-23 seq148 105 5e-18 >seq1035 Length=208423 Score = 122 bits (134), Expect = 7e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||||| || ||||||||| ||||||||||| || ||| | || || Sbjct 98366 ACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCATCCTCG 98425 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| |||| ||||| ||||| || || | || ||||||||| Sbjct 98426 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGAATTCCTTCCTTGTCCTGG 98485 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||||| || | | ||||||| ||| || || | || || |||||| Sbjct 98486 ATCTTCTGCTTGACGTTGTCAATGCTGTCCGATGGCTCGACATCGAGCGTGATGGTCTTG 98545 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 ||||||||||||||||||||||| ||||| || Sbjct 98546 CCCGTCAGAGTCTTCACAAAGATCTGCATCTT 98577 >seq148 Length=18536 Score = 105 bits (116), Expect = 5e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||||| ||| ||||||||| ||||||||||| || || |||| || Sbjct 112 ACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGGCCGTCCTCG 171 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| ||||| ||||| || || ||||| | || ||||||||| Sbjct 172 AGCTGCTTGCCAGCGAAAATCAATCGCTGCTGATCTGGAGGAATGCCTTCCTTGTCCTGG 231 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||||| || | | |||| | ||| || || | ||||| |||||| Sbjct 232 ATCTTCTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCGACGTCGAGAGTAATGGTCTTG 291 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 || |||| |||||||| ||||| ||||| ||| Sbjct 292 CCGGTCAACGTCTTCACGAAGATCTGCATCTTG 324 Score = 102 bits (112), Expect = 6e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| | ||| | | |||||||||| ||| ||||||||| ||||||||||| Sbjct 18521 CCACCACGCAAGCGGAGCACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAGTCCGAG 18462 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || || |||| || || || || || || || ||||| ||||| || || ||||| Sbjct 18461 AGGGTACGGCCGTCCTCGAGCTGCTTACCAGCAAAGATCAAACGCTGCTGATCTGGAGGA 18402 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| ||||||||| || || ||||| || | | ||| | ||| || Sbjct 18401 ATACCTTCCTTGTCCTGGATCTTCTGCTTGACATTGTCGATCGAGTCTGAAGGCTCGACG 18342 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 |||| ||||| |||||||| || || ||||| || ||||| ||||| ||| Sbjct 18341 TCCAACGTAATGGTCTTGCCGGTGAGTGTCTTGACGAAGATCTGCATCTTG 18291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395070177976903