Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq549 150 2e-31 seq1035 111 1e-19 seq148 98.7 9e-16 >seq549 Length=149600 Score = 150 bits (166), Expect = 2e-31 Identities = 547/839 (65%), Gaps = 24/839 (3%) Strand=Plus/Plus Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGAC 57626 || || ||| | |||||||| ||||| ||||| || ||||| ||||| || | || Sbjct 87645 GAGATCTGGGATATGTACAAGAAGGCGGAAGCCAGCTTCTGGACGGTCGAGGAGATCGAT 87704 Query 57627 CTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || | || || | || ||| | | | || |||| | | || || || Sbjct 87705 CTTGTGCACGACCTCAAGGACTGGAGCAACTTGACCGACAATGAGCGTCACTTCATCAAG 87764 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 |||||| | ||||| ||||| || ||||||||||| |||||||| | | | | || Sbjct 87765 CACGTGCTCGCGTTCTTCGCTGCCAGTGATGGTATTGTGAACGAGAACCTTGCC--ATGA 87822 Query 57747 TTTTCA-CAA-GAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCA 57804 |||| ||| ||||| || ||| | || || | ||||| ||||| || || | |||| Sbjct 87823 ACTTCAGCAACGAAGTCCAGGTGCCTGAAGCCCGCTGCTTCTACGGCTTCCAGATTGCCA 87882 Query 57805 TTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACG 57864 |||| ||| | || || |||||||| ||||| | || || |||||| | ||||| || Sbjct 87883 TTGAGAACATCCACTCGGAAATGTACTCGCTGTTGATTGACACGTACATCAAGGATGCCG 87942 Query 57865 ACGAGAAACGTA-GAC-TGTTCAACGCGATCGAAACAATGCC-CGCGATCGCCAAGAAGG 57921 |||||| | | || ||||| ||| || || ||||| || ||| | ||||||| Sbjct 87943 CCGAGAA--GAACCACTTGTTCCGCGCCATTGAGACAATCCCATGCG-TGCAGAAGAAGG 87999 Query 57922 CAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCG 57981 | | ||| | || ||| | | | ||| |||| || ||| | | ||| Sbjct 88000 CCAACTGGGCGCTCCGCTGGTGTGACTCAGAGAACGCCGCGTTTGCTGAGCGTGTCGTCG 88059 Query 57982 CGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGG-CAGCTTTGCGGCAATATTTTGGATG 58040 | ||||| ||| | || ||||| ||||| ||||| | | ||| | | || ||| | Sbjct 88060 CCTTCGCTGCCATTGAGGGTATCTTCTTCTCGGGTTCGTTCTGC-TCGGTCTTCTGGCTC 88118 Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAG 58100 ||||| || || || ||||| ||||| | || |||||| | || || || || Sbjct 88119 AAGAAGCGTGGTCTCATGCCTGGCCTCAGCTTCTCGAACGAGCTTATCAGTCGTGATGAA 88178 Query 58101 GGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCG--ACGC 58158 |||||||| ||| || || ||| | | ||| | ||| | ||||| | | Sbjct 88179 GGTCTCCACTGTGACTTCGCCTGCTTGCTCTACAACAAGCTTG----TTAACCGTCTCCC 88234 Query 58159 GGGATCGC--ATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCAC 58216 | |||| ||| || ||| ||| || || ||| ||||||| || ||||| |||| Sbjct 88235 AGAGTCGCGAATCCACGAGATTGTCAGTGATGCCGTCACGATCGAGAAGGAGTTCGTCAA 88294 Query 58217 CGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGA 58276 || | || || || | | ||||||||||| | | |||| ||||||| || Sbjct 88295 GGACTCGCTCCCAGTCGAGCTTATCGGTATGAACTCGGCGCTCATGTGCCAGTACATCGA 88354 Query 58277 GTTTGTTGCCGACAGACTTTTGCTCGAACT--GATTGGAGAGCGTCATTACAACACGAAA 58334 ||| || || || | ||| | | || || | | || || |||||| || Sbjct 88355 GTTCGTCGCTGATCGTCTTCTCCACGCTCTTGGTGTCTCGAAGATC--TACAACGCGTCC 88412 Query 58335 AATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGAAAA 58393 || || ||||| | ||| || ||||||||||| |||||||||| ||||| ||||| || Sbjct 88413 AACCCATTTGACTGGATGGATATGATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAA 88471 >seq1035 Length=208423 Score = 111 bits (122), Expect = 1e-19 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||||| || || || ||||||||||| ||||| || ||||| |||| || || || Sbjct 98578 AAAGATGCAGATCTTTGTGAAGACTCTGACGGGCAAGACCATCACGCTCGATGTCGAGCC 98519 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || ||||| | || | ||||| |||| || |||||||||||| | || || || Sbjct 98518 ATCGGACAGCATTGACAACGTCAAGCAGAAGATCCAGGACAAGGAAGGAATTCCACCAGA 98459 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||||||| || ||||| ||||| ||| | || || Sbjct 98458 CCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGA 98420 >seq148 Length=18536 Score = 98.7 bits (108), Expect = 9e-16 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| ||||| |||| ||||| || || || ||||||| || || Sbjct 323 AAGATGCAGATCTTCGTGAAGACGTTGACCGGCAAGACCATTACTCTCGACGTCGAGCCT 264 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || ||| |||| | ||||| |||| || ||||||||||||| | || || || Sbjct 263 TCGGACTCGATCGACAACGTCAAGCAGAAGATCCAGGACAAGGAAGGCATTCCTCCAGAT 204 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 |||||||| | || ||||||||||| ||| | || ||| Sbjct 203 CAGCAGCGATTGATTTTCGCTGGCAAGCAGCTCGAGGAC 165 Score = 84.2 bits (92), Expect = 2e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| ||||| || || ||||| || || || | ||||| || || Sbjct 18292 AAGATGCAGATCTTCGTCAAGACACTCACCGGCAAGACCATTACGTTGGACGTCGAGCCT 18351 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || ||| |||| | ||||| |||| || |||||||||||| | || || || Sbjct 18352 TCAGACTCGATCGACAATGTCAAGCAGAAGATCCAGGACAAGGAAGGTATTCCTCCAGAT 18411 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 ||||||||| | || || ||||| || ||| | || ||| Sbjct 18412 CAGCAGCGTTTGATCTTTGCTGGTAAGCAGCTCGAGGAC 18450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445760588320560