Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq549 149 8e-31 >seq549 Length=149600 Score = 149 bits (164), Expect = 8e-31 Identities = 397/603 (66%), Gaps = 9/603 (1%) Strand=Plus/Minus Query 33578 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGT 33637 ||| || ||||| || ||||| ||||| || || | ||| || | ||||| || || | Sbjct 88205 CAAGCAGGCGAAGTCACAGTGGAGACCTTCATCACGACTGATAAGCTCGTTCGAGAAGCT 88146 Query 33638 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAA 33697 ||| || ||||| || |||||||| || ||||| || | || ||| || || || || Sbjct 88145 GAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGACCGAGCAGAACGAACCCGAGAA 88086 Query 33698 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATG 33757 |||||| || || | ||||| ||||| | | | ||| || | ||||| | || || Sbjct 88085 GAAGATACCCTCAATGGCAGCGAAGGCGACGACACGCTCAGCAAACGCGGCGTTCTC-TG 88027 Query 33758 TATC----CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 33813 || || | ||||| | ||||||||| | || || || || || || |||| Sbjct 88026 AGTCACACCAGCGGAGCGCCCAGTTGGCCTTCTTCTGCACGCATGGGATTGTCTCAATGG 87967 Query 33814 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTAT 33873 | || | | ||| || || ||| || | || || || ||||| || | Sbjct 87966 CGCGGAACAAGTGGTTCTTCTCGGCGGCATCCTTGATGTACGTGTCAATCAACAGCGAGT 87907 Query 33874 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 33933 |||||||||| || ||||| |||||||| ||||| || |||||||| || | || || | Sbjct 87906 ACATTTCCGAGTGGATGTTCTCAATGGCAATCTGGAAGCCGTAGAAGCAGCGGGCTTCAG 87847 Query 33934 TAATCTGCACTTCTGTACAAAATCGTTC--TGCTAAATTTTCATTCACTATTCCATCACT 33991 | ||| ||||| | | || |||| || | || || ||||| || |||||||| Sbjct 87846 GCACCTGGACTTCGTTGCTGAA--GTTCATGGCAAGGTTCTCGTTCACAATACCATCACT 87789 Query 33992 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATT 34051 ||| || || ||||| | || || || || || | || | || | || | Sbjct 87788 GGCAGCGAAGAACGCGAGCACGTGCTTGATGAAGTGACGCTCATTGTCGGTCAAGTTGCT 87729 Query 34052 CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGC 34111 ||| || |||| || | | ||| | || || || ||||| || || || || Sbjct 87728 CCAGTCCTTGAGGTCGTGCACAAGATCGATCTCCTCGACCGTCCAGAAGCTGGCTTCCGC 87669 Query 34112 CTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGG 34171 ||| || ||||||| |||||| || | | ||||| ||||| | || |||| ||||| Sbjct 87668 CTTCTTGTACATATCCCAGATCTCCTTCTCCTGGATCGGGAAGAGCACGAATCGGTTTGG 87609 Query 34172 ATT 34174 || Sbjct 87608 GTT 87606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629809388753040