Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq549 127 3e-24 >seq549 Length=149600 Score = 127 bits (140), Expect = 3e-24 Identities = 371/565 (66%), Gaps = 11/565 (2%) Strand=Plus/Minus Query 36154 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 36213 ||| || ||||| || ||||| ||||| || || | ||| || | ||||| || || | Sbjct 88205 CAAGCAGGCGAAGTCACAGTGGAGACCTTCATCACGACTGATAAGCTCGTTCGAGAAGCT 88146 Query 36214 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAA 36272 ||| || ||||| || |||||||| || ||||| || | || ||| || || || || | Sbjct 88145 GAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGACCGA-GCAGAACGAACCCGAGA 88087 Query 36273 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCAT 36332 |||| || || || | || || ||||| | | | ||| || | |||| | || | Sbjct 88086 AGAAGATACCCTCAATGGCAGCGAAGGCGACGACACGCTCAGCAAACGCGGCGTTCTC-T 88028 Query 36333 GTATC----CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 36388 | || || | ||||| | ||||||||| | || || || |||||||| || Sbjct 88027 GAGTCACACCAGCGGAGCGCCCAGTTGGCCTTCTTCTGCACGCATGGGATTGTCTCAATG 87968 Query 36389 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 36448 || || | | ||| || || ||| || | || || |||||||| || Sbjct 87967 GCGCGGAACAAGTGGTTCTTCTCGGCGGCATCCTTGATGTACGTGTCAATCAACAGCGAG 87908 Query 36449 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCG 36508 ||||||||||| || ||||| |||||||| || || || |||||||| || | || || Sbjct 87907 TACATTTCCGAGTGGATGTTCTCAATGGCAATCTGGAAGCCGTAGAAGCAGCGGGCTTCA 87848 Query 36509 GTAATCTGTACTTCTGTACAAAATCGTTC--TGCTAAATTTTCATTCACTATTCCGTCAC 36566 | | ||| ||||| | | || |||| || | || || ||||| || || |||| Sbjct 87847 GGCACCTGGACTTCGTTGCTGAA--GTTCATGGCAAGGTTCTCGTTCACAATACCATCAC 87790 Query 36567 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTAT 36626 |||| || || ||||| | || || || || || | || || || | || Sbjct 87789 TGGCAGCGAAGAACGCGAGCACGTGCTTGATGAAGTGACGCTCATTGTCGGTCAAGTTGC 87730 Query 36627 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 36686 |||| || |||| || | | ||| | || || || ||||| || || || | Sbjct 87729 TCCAGTCCTTGAGGTCGTGCACAAGATCGATCTCCTCGACCGTCCAGAAGCTGGCTTCCG 87670 Query 36687 CCTTTTTATACATATTCCAGATGTC 36711 |||| || ||||||| |||||| || Sbjct 87669 CCTTCTTGTACATATCCCAGATCTC 87645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658164219072120