Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq272 167 2e-36 >seq272 Length=54113 Score = 167 bits (184), Expect = 2e-36 Identities = 310/451 (69%), Gaps = 8/451 (2%) Strand=Plus/Plus Query 20888 CGGAAACGGACGCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTA 20947 ||| |||||||| || || | | || ||| | | || || || | |||||| ||| Sbjct 10213 CGGGAACGGACGAGGAGTGCGTCCCAACTGGATCTTGAGCGGCTCGAGGTGGTTCAAGTA 10272 Query 20948 AACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGC 21007 | ||| || ||||| | | || || ||||| || | | || || | ||| ||||| Sbjct 10273 GATGTGTGCATCACCAATGACATGGACGAAGTCACCGGCCTTGAGCCCAGCGACCTGAGC 10332 Query 21008 GATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTC 21067 ||||| |||| | ||||| |||||||| |||||||| || |||||||||||||| Sbjct 10333 GATCAATCGGGTCAACAACGCGTAACTGGCGATATTAAACGGCACACCGAGGCCCATGTC 10392 Query 21068 GGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACACAA 21127 || || | |||||||| ||||| || ||||| || || ||||| ||||| || || Sbjct 10393 AGCCGATCGCTGGTACATTTGGCACGAGAGCTCGCCATTCGCGACGTAGAACTGGCAGAA 10452 Query 21128 AACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACATAAC 21187 | ||| || ||||| || |||||| | |||||| || || ||||| || ||| | Sbjct 10453 CATGTGGCACGGAGGAAGCGCCATCTCCTTGAGGTCTGCTGGATTCCATGCAGACAAGAG 10512 Query 21188 GATGCGCCGATCGTGGGGCCGCCTGTTAA----TTAGATCCACCACGTAACGCAGCTGGT 21243 || ||||| |||| || | |||| | ||| ||| | | || ||||| | Sbjct 10513 AATACGCCGGTCGTTCGGGTTGGTCTTAAGCTTGTGGAT-GACCTC--AGCG-AGCTGAT 10568 Query 21244 CCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGTCTCC 21303 |||| |||||||| ||| | ||||| | | |||| || ||||| || | || Sbjct 10569 CCACACCCTGACCGGTGTAATCGGCGTGCATATCGGTATACTTGGCACCAAAGTGACGCC 10628 Query 21304 ACTGGAACCCGTACACCGGCCCCAGATCGCC 21334 ||||||| || ||||| || || |||||||| Sbjct 10629 ACTGGAAGCCATACACTGGACCGAGATCGCC 10659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427770562298640