Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq549 161 1e-34 >seq549 Length=149600 Score = 161 bits (178), Expect = 1e-34 Identities = 402/604 (67%), Gaps = 11/604 (2%) Strand=Plus/Minus Query 49956 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 50015 ||| || ||||| || ||||| ||||| || || | ||| || || ||||| || || | Sbjct 88205 CAAGCAGGCGAAGTCACAGTGGAGACCTTCATCACGACTGATAAGCTCGTTCGAGAAGCT 88146 Query 50016 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAA 50074 ||| || ||||| || |||||||| || ||||| || | || ||| || || || || | Sbjct 88145 GAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGACCGA-GCAGAACGAACCCGAGA 88087 Query 50075 AGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCAT 50134 ||||||| || || | || || ||||| || | | ||| || | |||| | || | Sbjct 88086 AGAAGATACCCTCAATGGCAGCGAAGGCGACGACACGCTCAGCAAACGCGGCGTTCTC-T 88028 Query 50135 GTATC----CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 50190 | || || | ||||| | ||||||||| | || || || || || || ||| Sbjct 88027 GAGTCACACCAGCGGAGCGCCCAGTTGGCCTTCTTCTGCACGCATGGGATTGTCTCAATG 87968 Query 50191 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 50250 || || | | ||| || || ||| || | || || || ||||| || Sbjct 87967 GCGCGGAACAAGTGGTTCTTCTCGGCGGCATCCTTGATGTACGTGTCAATCAACAGCGAG 87908 Query 50251 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 50310 ||||||||||| || ||||| |||||||| ||||| || |||||||| || | || || Sbjct 87907 TACATTTCCGAGTGGATGTTCTCAATGGCAATCTGGAAGCCGTAGAAGCAGCGGGCTTCA 87848 Query 50311 GTAATCTGCACTTCTGTACAAAATCGTTCA--GCTAAATTTTCATTCACTATTCCGTCAC 50368 | | ||| ||||| | | || ||||| || | || || ||||| || || |||| Sbjct 87847 GGCACCTGGACTTCGTTGCTGAA--GTTCATGGCAAGGTTCTCGTTCACAATACCATCAC 87790 Query 50369 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTAT 50428 |||| || || ||||| | || || || || || || || ||| || | || Sbjct 87789 TGGCAGCGAAGAACGCGAGCACGTGCTTGATGAAGTGACGCTCATTGTCGGTCAAGTTGC 87730 Query 50429 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTG 50488 |||| || |||| || | | ||| | || || || ||||| || || || | Sbjct 87729 TCCAGTCCTTGAGGTCGTGCACAAGATCGATCTCCTCGACCGTCCAGAAGCTGGCTTCCG 87670 Query 50489 CCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTG 50548 |||| || ||||||| |||||| || | | ||||| ||||| | || |||| |||| Sbjct 87669 CCTTCTTGTACATATCCCAGATCTCCTTCTCCTGGATCGGGAAGAGCACGAATCGGTTTG 87610 Query 50549 GATT 50552 | || Sbjct 87609 GGTT 87606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718259435570520