Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq549 170 3e-37 seq272 140 5e-28 >seq549 Length=149600 Score = 170 bits (188), Expect = 3e-37 Identities = 559/849 (66%), Gaps = 30/849 (4%) Strand=Plus/Plus Query 125016 GACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGAT 125075 || || ||||| |||||||| ||||| | ||| ||| ||||||||||| ||| ||||| Sbjct 87645 GAGATCTGGGATATGTACAAGAAGGCGGAAGCCAGCTTCTGGACGGTCGAGGAGATCGAT 87704 Query 125076 CT-GTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTAT 125134 || || || | |||| | || ||| || | ||||| || | |||||| | || || Sbjct 87705 CTTGTGCACG-ACCTCAAGGACTGG-AGCAAC--TTGACCGACAATGAGCGTCACTTCAT 87760 Query 125135 ATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGAC 125194 |||| | | || ||||| || | | ||||| || || ||||| || || || | Sbjct 87761 CAAGCACGTGCTCGCGTTCTTCGCTGCCAGTGATGGTATTGTGAACGAGAACCT--TGCC 87818 Query 125195 ACGATTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATC 125252 | || || | | | ||| | || || | ||||| ||||| ||||| || Sbjct 87819 ATGAACTTCAGCAACGAAGTCCAGGTGCCTGAAGCCCGCTGCTTCTACGGCTTCCAGATT 87878 Query 125253 ATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGAT 125312 ||||||||| | ||||||||||||||||| ||||||||| |||||| ||| Sbjct 87879 GCCATTGAGAACATCCACTCGGAAATGTACTCGCTGTTGATTGACACGTACATCAAGGAT 87938 Query 125313 -CCGCAACGTAAA--CACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAA 125369 |||| | | | ||| || || ||| || || || | || | | | || Sbjct 87939 GCCGCCGAGAAGAACCACTTGTTCCG---CGCCATTGAGACAATCCCATGCGTGCAGAAG 87995 Query 125370 AAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTG 125429 ||||| | |||| | | || ||| || || || | ||| || || | | Sbjct 87996 AAGGCCAACTGGGCGCTCCGCTGGTGTGACTCAGAGAACGCCGCGTTTGCTGAGCGTGTC 88055 Query 125430 GTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTA-GTTTTGCGGCCATCTTTTG 125488 || || ||||| ||| | ||||| |||||||| |||||| ||| ||| | |||| || Sbjct 88056 GTCGCCTTCGCTGCCATTGAGGGTATCTTCTTCTCGGGTTCGTTCTGCT-CGGTCTTCTG 88114 Query 125489 GCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGA 125548 |||||||||||| || |||||||| || || | | |||||| |||| ||| || Sbjct 88115 GCTCAAGAAGCGTGGTCTCATGCCTGGCCTCAGCTTCTCGAACGAGCTTATCAGTCGTGA 88174 Query 125549 CGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATC-TGCGTCCCGAGT 125607 || || || ||||||||||| ||| | || || | |||| | | || ||| | Sbjct 88175 TGAAGGTCTCCACTGTGACTTCGCC-TGCT--TGCTCTACAACAAGCTTGTTAACCGTCT 88231 Query 125608 GCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAG 125667 |||| | | || || | | ||||| | |||||||| | ||| || | | Sbjct 88232 -----CCCAGAGTCGCGAA--TCCACGAGATTGTCAGTGATGCCGTCACGATCGAGAAGG 88284 Query 125668 AGTTTCTAACCGAATCCCTACCGGTC-AGCATGATTGGCATGAACTGCAAGCTAATGTGC 125726 |||| | | || || || || ||| ||| | || || ||||||| ||| |||||| Sbjct 88285 AGTTCGTCAAGGACTCGCTCCCAGTCGAGC-TTATCGGTATGAACTCGGCGCTCATGTGC 88343 Query 125727 GAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGCAAGATTTAC 125786 ||||||| ||||| || || |||||||| || ||| | || | ||||| ||| Sbjct 88344 CAGTACATCGAGTTCGTCGCTGATCGTCTTCTCCACGCTCTTGGTGTCTCGAAGATCTAC 88403 Query 125787 AACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTT 125846 ||||| || || ||||| | ||| | || || || |||| ||||||||||| Sbjct 88404 AACGCGTCCAACCCATTTGACTGGATGGATATGATCTCGCTCCAGGGCAAGACCAACTTC 88463 Query 125847 TTCGAGAAG 125855 ||||||||| Sbjct 88464 TTCGAGAAG 88472 >seq272 Length=54113 Score = 140 bits (154), Expect = 5e-28 Identities = 285/412 (69%), Gaps = 10/412 (2%) Strand=Plus/Minus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126 |||||||| || |||||||| || ||||||||| | |||| || |||||||| || Sbjct 10659 GGCGATCTCGGTCCAGTGTATGGCTTCCAGTGGCGTCACTTTGGTGCCAAGTATACCGAT 10600 Query 70127 -TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATT-GCAGACAATCATTGACACTC 70184 ||| | | || || | ||||||||||| ||||| | || || |||| ||| | Sbjct 10599 ATGCACGCC-GATTACACCGGTCAGGGTGTGGATCAGCTCGCTGAGG-TCATCCACAAGC 10542 Query 70185 TCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGC 70244 | |||||||| || | || || | || | ||| |||||||||| ||||| | Sbjct 10541 TTAAGACCAACCCGAACGACCGGCGTATTCTCTTGTCTGCATGGAATCCAGCAGACCTCA 10482 Query 70245 ACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTAC-TCGTACGA-TGGCA 70301 | | ||||| || || ||||| ||| |||| || ||||| ||| ||| ||| |||| Sbjct 10481 AGGAGATGGCGCTTCCTCCGTGCCACATGTTCTGC-CAGTTCTACGTCG--CGAATGGCG 10425 Query 70302 AATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACA 70361 | | || ||| |||||| ||| | || ||||||||||||||||| || ||||| | Sbjct 10424 AGCTCTCGTGCCAAATGTACCAGCGATCGGCTGACATGGGCCTCGGTGTGCCGTTTAATA 10365 Query 70362 TTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCACG 70421 | || || || | ||||||| | |||| ||||| | | || || || || | Sbjct 10364 TCGCCAGTTACGCGTTGTTGACCCGATTGATCGCTCAGGTCGCTGGGCTCAAGGCCGGTG 10305 Query 70422 AGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCC 70473 | ||||| || |||||| || || ||| | || || || ||| ||||||| Sbjct 10304 ACTTCGTCCATGTCATTGGTGATGCACACATCTACTTGAACCACCTCGAGCC 10253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741049538440680