Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq148 93.3 4e-14 >seq148 Length=18536 Score = 93.3 bits (102), Expect = 4e-14 Identities = 163/234 (70%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || ||||| | | ||| || || | || |||||| || |||||||| || | Sbjct 18522 ACCACCACGCAAGCGGAGCACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAGTCCGA 18463 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | || ||||||| ||||||||||| | | || |||||||||||||| || Sbjct 18462 GAGGGTACGGCCGTCCTCGAGCTGCTTACCAGCAAAGATCAAACGCTGCTGATCTGGAGG 18403 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTC--C 48676 | || |||||||||| || |||||||||| | | || | || | || ||| | Sbjct 18402 AATACCTTCCTTGTCCTGGATCTTCTGCTTGACATTGTCGATCGAGTCTGAAGGCTCGAC 18343 Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 ||| | || || ||||| || |||||||| || || || || ||||||||| || Sbjct 18342 GTC-CAAC-GTAATGGTCTTGCCGGTGAGTGTCTTGACGAAGATCTGCATCTTG 18291 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || | | || ||||||| |||||||| || || | Sbjct 129 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGGCCGTCCTCGAGCTGCTTGCCAGCGAA 188 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652 ||| || ||||||||||| || | | |||||||||| || |||||||||| | Sbjct 189 AATCAATCGCTGCTGATCTGGAGGAATGCCTTCCTTGTCCTGGATCTTCTGCTTGACGTT 248 Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | || || | || | || ||| |||| || ||||| || ||||| | || ||| Sbjct 249 GTCG--ATCGAGTCCGAAGGCTCGACGTCGAGAGTAATGGTCTTGCCGGTCAACGTCTTC 306 Query 48713 ACAAAAATCTGCATCGTGT 48731 || || ||||||||| ||| Sbjct 307 ACGAAGATCTGCATCTTGT 325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421245845239043