Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= NC_005885.1 Length=58638 Score E Sequences producing significant alignments: (Bits) Value seq493 118 4e-22 seq145 109 2e-19 >seq493 Length=140869 Score = 118 bits (130), Expect = 4e-22 Identities = 296/443 (67%), Gaps = 30/443 (7%) Strand=Plus/Minus Query 53536 GTACGGGCCGAGTTCAACACGGTGTTCCCCGGCCGGGATAAGGCCACGGACGGCTCGGTG 53595 || || || || | |||| ||| |||||| || || ||| || | || |||| | | Sbjct 129940 GTCCGTGCAGAATCCAACGCGGCATTCCCCAAGCGCGACAAGTCCTCCGATGGCTGGATC 129881 Query 53596 GGCGACCTCGCTCACCAGACCGGCTCCTCCGGCCACAACCCGGACCGGACCGGCAAGGCG 53655 |||||| || ||||| |||| | || || |||||||| ||| || || || || Sbjct 129880 GGCGACACGGCCCACCAATCCGGAACGTCGGGACACAACCCCGACATCACGGGTAACGCC 129821 Query 53656 GAGTACAAGGACGGGGACAGCAAGGACGAGGTTCGCGCCATCGACGTGGACCGCGACCTG 53715 |||||||||||||| ||||||||| |||| || || ||||||||||||||| ||| || Sbjct 129820 GAGTACAAGGACGGCGACAGCAAGAACGA-GTGCGTGCCATCGACGTGGACGCTGACTTG 129762 Query 53716 ATCCCGGGCTCGGCCACGGACTGGATGGAACTCGTCATCCAGTACCTGATCA--AGAAGG 53773 | | | ||||| | | |||||| |||| | |||||| || ||| | || | Sbjct 129761 AAATCCGACTCGGGC---GTTACCATGGAAGACGTCGTGCAGTACATGCTCACCAAAATG 129705 Query 53774 CCAGGGCCGGGGGGTACATCCCGTTCCGGTACATCATCTACAAGGGCCGGATCTGG-GCA 53832 | | | || ||||| |||||||| ||| | |||| ||| || |||||| ||| Sbjct 129704 C--GTGGTGGTACGTACACGCCGTTCCGCTACTTGATCTTCAACAAGCGCATCTGGAGCA 129647 Query 53833 CGCTCGGACGGCTGGCAGACCCGGACGTACACCGGCTCGAACAAGCACGACAAGCAC--G 53890 | | || ||| || | | ||||||| || |||| |||| ||||| | Sbjct 129646 AGAGC-AACAATTGGGAGCAACAGCCGTACACGGGGTCGAGTCCGCACACGGAGCACCTG 129588 Query 53891 CCCATTTCTCGGGCGACTA---------------CACCCAGACCGCCGACGAGTGGACGG 53935 | ||||||| || ||||| ||| ||| |||||||||||| | | Sbjct 129587 CACATTTCT--GGTGACTATGGCACTGCGGAGCGCACTGAGAAGGCCGACGAGTGGTCTG 129530 Query 53936 GCTCGCTGGGC-CTGGCCTCGGT 53957 || | |||||| |||||||||| Sbjct 129529 GCACCCTGGGCTTTGGCCTCGGT 129507 >seq145 Length=4486 Score = 109 bits (120), Expect = 2e-19 Identities = 193/281 (69%), Gaps = 3/281 (1%) Strand=Plus/Plus Query 53536 GTACGGGCCGAGTTCAACACGGTGTTCCCCGGCCGGGATAAGGCCACGGACGGCTCGGTG 53595 || || ||||| |||||| | | ||| ||| || || ||| || |||| |||| | | Sbjct 1833 GTCCGTGCCGAATTCAACTCAGCGTTTCCCAAGCGCGACAAGTCCTCGGATGGCTGGATC 1892 Query 53596 GGCGACCTCGCTCACCAGACCGGCTCCTCCGGCCACAACCCGGACCGGACCGGCAAGGCG 53655 |||||| ||| || || | | || || |||||||| ||| | || | | Sbjct 1893 GGCGACGCCGCCCATCAAAAGGAAAAGTCTGGACACAACCCCGACATCTCGGGTACTCCC 1952 Query 53656 GAGTACAAGGACGGGGACAGCAAGGACGAGGTTCGCGCCATCGACGTGGACCGCGACCTG 53715 |||||||||||||| ||||||||| |||| || || ||||||||||||||| ||| || Sbjct 1953 GAGTACAAGGACGGCGACAGCAAGAACGAAGTGCGTGCCATCGACGTGGACTCGGACTTG 2012 Query 53716 ATCCCGGGCTCGGCCACGGACTGGATGGAACTCGTCATCCAGTACCTGATCAAGAAGGCC 53775 | | | ||||| | | |||||| |||| | |||||| || ||| ||| Sbjct 2013 AAGTCCGACTCGGGC---GTTACCATGGAAGACGTCGTGCAGTACTTGCTCACCAAGTTG 2069 Query 53776 AGGGCCGGGGGGTACATCCCGTTCCGGTACATCATCTACAA 53816 | | || |||||| |||||||| ||| | |||||||| Sbjct 2070 CGTGGTGGCACGTACATGCCGTTCCGCTACTTGATCTACAA 2110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 187517677447600