Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq272 123 6e-23 >seq272 Length=54113 Score = 123 bits (136), Expect = 6e-23 Identities = 349/529 (66%), Gaps = 8/529 (2%) Strand=Plus/Minus Query 111426 ATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTCGACAACGAA 111485 |||||||| || |||||||| || | ||||| | ||||| | | |||| Sbjct 10722 ATTTGGGACGGCAATGGATCGAAGGAATACCTAGAAAGCATCGGTCTCGGTCATCGCGAA 10663 Query 111486 GAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAA 111545 | ||| |||||||| ||||| || || || || ||||| ||||||||||| | || | Sbjct 10662 GCAGGCGATCTCGGTCCAGTGTATGGCTTCCAGTGGCGTCACTTTGGTGCCAAGTATACC 10603 Query 111546 ACCATGCACGACTCATATGATTCACAGGGAACTGATCAATTACAGAATGTCATTGATCAA 111605 ||||||| | || ||||| ||||| | | ||||| | | Sbjct 10602 GATATGCACGCCGATTACACCGGTCAGGGTGTGGATCAGCTCGCTGAGGTCATCCACAAG 10543 Query 111606 ATTAAGAACAACCC-AACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATT 111664 |||||| |||||| ||| | || || ||| | || ||||||||| ||| | | Sbjct 10542 CTTAAGACCAACCCGAACGAC-CGGCGTATTCTCTTGTCTGCATGGAATCCAGCAGACCT 10484 Query 111665 GGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGACGGGAT 111724 | | ||||| ||||| || || || | | |||||||| || || | ||| || Sbjct 10483 CAAGGAGATGGCGCTTCCTCCGTGCCACATGTTCTGCCAGTTCTACGT-CGCGAATGGCG 10425 Query 111725 -GCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATA 111783 ||| || ||||||||||| |||||||| ||||| || || || ||||| |||||||||| Sbjct 10424 AGCTCTCGTGCCAAATGTACCAGCGATCGGCTGACATGGGCCTCGGTGTGCCGTTTAATA 10365 Query 111784 TTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGTG 111843 | || |||||||| | | || | || |||||||| | | ||||| | |||| Sbjct 10364 TCGCCAGTTACGCGTTGTTGACCCGATTGATCGCTCAGGTCGCTGGGCTCAAGGCCGGTG 10305 Query 111844 AATTCATTCACGTTATCGGAGATGCGCATGTTTACACAAACCACATTGATGCACTTAAAA 111903 | ||| | || || || || ||||| || | ||| |||||| | || | || || | Sbjct 10304 ACTTCGTCCATGTCATTGGTGATGCACACATCTACTTGAACCACCTCGAGCCGCTCAAGA 10245 Query 111904 CACAGTTGAAGCGCAAAC--CATACGATTTCCCAACGATTCATATCAAT 111950 |||||| |||| | | | || ||||| ||| ||| |||||| Sbjct 10244 TCCAGTTGGGACGCACTCCTCGTCCG--TTCCCGACGCTTCGCATCAAT 10198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303336182715626