Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1035 134 1e-26 seq148 134 1e-26 seq132 96.9 3e-15 >seq1035 Length=208423 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| || || | |||||||||||| || |||||||| || Sbjct 98348 CCACCACGAAGACGGAGCACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCCGAG 98407 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| ||||||||||| ||| |||| | |||||||||||| || || Sbjct 98408 AGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGA 98467 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| ||||| ||| |||||||||| | || | | || | | ||||| Sbjct 98468 ATTCCTTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCAATGCTGTCCGATGGCTCGACA 98527 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | ||| || || || ||||| || || || |||||||| Sbjct 98528 TCGAGCGTGATGGTCTTGCCCGTCAGAGTCTTCACAAAGATCTGCAT 98574 >seq148 Length=18536 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| ||||| || ||||| || || | || |||||||| || |||||||| || Sbjct 18521 CCACCACGCAAGCGGAGCACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAGTCCGAG 18462 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || |||||| |||||||| || || |||| ||||||||||| || ||||| Sbjct 18461 AGGGTACGGCCGTCCTCGAGCTGCTTACCAGCAAAGATCAAACGCTGCTGATCTGGAGGA 18402 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| |||||||||| | || | | || | | ||||| | Sbjct 18401 ATACCTTCCTTGTCCTGGATCTTCTGCTTGACATTGTCGATCGAGTCTGAAGGCTCGACG 18342 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||| || ||||| || || || ||||| |||||||| Sbjct 18341 TCCAACGTAATGGTCTTGCCGGTGAGTGTCTTGACGAAGATCTGCAT 18295 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || ||||| || || | || |||||||| || |||||||| || Sbjct 94 CCACCACGAAGGCGGAGCACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAGTCCGAG 153 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || |||||| ||||||||||| ||| | || || |||||||| || ||||| Sbjct 154 AGGGTACGGCCGTCCTCGAGCTGCTTGCCAGCGAAAATCAATCGCTGCTGATCTGGAGGA 213 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| |||||||||| | || | | || | | ||||| | Sbjct 214 ATGCCTTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCGACG 273 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| |||| ||| || ||||| | || || ||||| |||||||| Sbjct 274 TCGAGAGTAATGGTCTTGCCGGTCAACGTCTTCACGAAGATCTGCAT 320 >seq132 Length=57701 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || ||||| || || | |||||||||||| || |||||||| || | Sbjct 9848 CCACCACGAAGGCGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 9907 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| |||||||| || ||| |||| | ||||||||| || ||||| Sbjct 9908 AAGGTGCGGCCATCCTCAAGCTGCTTACCAGCGAAGATCAGACGCTGCTGATCTGGAGGA 9967 Query 131128 ATTCCT 131133 |||||| Sbjct 9968 ATTCCT 9973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472006646133120