Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq549 134 2e-26 >seq549 Length=149600 Score = 134 bits (148), Expect = 2e-26 Identities = 306/454 (67%), Gaps = 11/454 (2%) Strand=Plus/Minus Query 32657 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 32716 ||| || ||||| || ||||| ||||| || || | ||| || | ||||| || || | Sbjct 88205 CAAGCAGGCGAAGTCACAGTGGAGACCTTCATCACGACTGATAAGCTCGTTCGAGAAGCT 88146 Query 32717 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAA 32775 ||| || ||||| || |||||||| || ||||| || | || ||| || || || || | Sbjct 88145 GAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGACCGA-GCAGAACGAACCCGAGA 88087 Query 32776 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCAT 32835 |||| || || || | || || ||||| | | | ||| || | ||||| | || | Sbjct 88086 AGAAGATACCCTCAATGGCAGCGAAGGCGACGACACGCTCAGCAAACGCGGCGTTCTC-T 88028 Query 32836 GTATC----CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 32891 | || || | ||||| | ||||||||| | || || || |||||||| || Sbjct 88027 GAGTCACACCAGCGGAGCGCCCAGTTGGCCTTCTTCTGCACGCATGGGATTGTCTCAATG 87968 Query 32892 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 32951 || || | | ||| || || ||| || | || || |||||||| || Sbjct 87967 GCGCGGAACAAGTGGTTCTTCTCGGCGGCATCCTTGATGTACGTGTCAATCAACAGCGAG 87908 Query 32952 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCG 33011 ||||||||||| || ||||| |||||||| || || || ||||||||||| | || || Sbjct 87907 TACATTTCCGAGTGGATGTTCTCAATGGCAATCTGGAAGCCGTAGAAGCAGCGGGCTTCA 87848 Query 33012 GTAATCTGTACTTCTGTACAAAATCGTTC--TGCTAAATTTTCATTCACTATTCCGTCAC 33069 | | ||| ||||| | | || |||| || | || || ||||| || || |||| Sbjct 87847 GGCACCTGGACTTCGTTGCTGAA--GTTCATGGCAAGGTTCTCGTTCACAATACCATCAC 87790 Query 33070 TGGCTGCAAAAAACGCCAATACATGTTTTATAAA 33103 |||| || || ||||| | || || || || || Sbjct 87789 TGGCAGCGAAGAACGCGAGCACGTGCTTGATGAA 87756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633623739022800