Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq561 152 1e-31 seq549 147 4e-30 seq797 132 1e-25 seq577 87.8 4e-12 >seq561 Length=342854 Score = 152 bits (168), Expect = 1e-31 Identities = 659/1022 (64%), Gaps = 39/1022 (4%) Strand=Plus/Plus Query 279351 GATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAACTCTACC 279410 ||||| ||| ||||||| ||||||||||| || ||||| | ||| |||| ||| | Sbjct 171322 GATCTCTGTAACTGTGAGTTCTCGCTCGCTTACGGTGGTATGATCTTGCTCAACAACGCT 171381 Query 279411 CGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCGGGTAAG 279470 || || |||||||||| |||| || |||||| ||||| || || |||||| Sbjct 171382 CGTCTTCGTCTCAAGCGTGGTCACCGTTACGGTCTCTGTGGTCCAAACGGTTGTGGTAAG 171441 Query 279471 AGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCATC-TGA 279529 || || ||||| ||||| | || |||||||| || || || || || ||| ||| Sbjct 171442 TCGACGCTCATGCGTGCCATCTCGAAGGGTCAGCTCGAGGGCTTCCCAAA-GCAGGATGA 171500 Query 279530 GGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCTCTCTCGGATAGCACTGTGTT 279589 | | | ||| |||| || |||||| || || | || | ||| |||| | Sbjct 171501 GCTCAAGACCGTGTTCGTTGAGCACAACCTCCAGGCCGAGGAAGCCGATCTTCCTGTCCT 171560 Query 279590 CGACTTCCTAACGTCTGACAATCAGGTTATGGAAATCAGCTCTCC--TGAGGAAATCATC 279647 ||||||| | | ||| | ||| | || || |||| | ||| ||| || Sbjct 171561 CGACTTCATGTTCTGTGA---TGAGGCCCTC-AAGTC-GCTCGCACGTGAAGAAGTCCGT 171615 Query 279648 CAGAAACTGGAGGCCAATGGTTTTGATGAAAGAATGCGTAATCTGCCAGTAGGTTCTCTG 279707 ||| || | | || || || |||| ||| ||||| ||| |||| Sbjct 171616 GAGATGCTCTCGAGCGTCGGCTTCACCGACGAGATGCAGGCTCTTCCAGTCGGTGCTCTT 171675 Query 279708 TCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGATGTC 279767 ||||||||||||||||||||||| | | |||| ||||| | || || ||| || Sbjct 171676 TCGGGTGGTTGGAAGATGAAGCTCGAATTGGCTCGTGCCATGTTGATGAAGGCTGATATC 171735 Query 279768 CTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTGTCC 279827 | |||| ||||| || || |||||| |||| || ||||| |||||| | | | | Sbjct 171736 TTGTTGCTCGATGAACCTACGAACCACTTGGATGTCAAGAACGTCGCCTGGTTGGAGAAC 171795 Query 279828 TACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTCCTA 279887 ||| | | ||| || | || || | || |||| || || |||||||| || || | Sbjct 171796 TACTTGAACAGCCTCACCAACGTGACCTCGATCATGGTGTCGCACGACTCGGGTTTTTTG 171855 Query 279888 GATGCCGTGTGCTCTGCCATCATTCACTATGAGCAA---AATCTGAAGCTCTCCAAGCAC 279944 || |||||| | |||||| ||||| ||| | || || ||| ||| |||| Sbjct 171856 GACAACGTGTGTACCAACATCATCCACTACGAGAACCGTAAGCTCAAGATCTACAAG--- 171912 Query 279945 ATCGGCAACCTGTCTGCTTTCGT---GGCAAAGCGCCCTGAGGCGGCCGCCTACTATGAC 280001 || ||||| || ||||| || |||| | ||||| ||||||| || Sbjct 171913 ---GGTAACCTCTCGAAGTTCGTCGAGGTCAAGC---CAGAGGCCAAGACCTACTACGAG 171966 Query 280002 CTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGGGCATCAC- 280060 || ||| || || ||||| ||||||||||| || || ||| | |||| Sbjct 171967 TTGGAGGCTGCTGCCTTCAAGTTCACCTTCCCTGAGCCTGGTTTCTTGGCTGATATCAAG 172026 Query 280061 ATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCG---TCTCCTTTGCTTATCCCAA-TG 280116 | ||| || || | ||||| | | || || | | | | | |||| | Sbjct 172027 AACAAGGGTAAGC-CGATCATTC-GTT---TGACGAACTGTTCGTACCAGTACCCAGGTC 172081 Query 280117 GCCCCAA--CATCT-TCAGCAGTGTCAACTCGCAGGT-TTCTATGAACTCACGGATTGGT 280172 | ||| |||| ||||| || || || || | ||| | || || |||| Sbjct 172082 GTGACAAGCCATCGATCAGCGGTATCT-CTGTCACCTGTTCGCTTGCTTCCCGTATTGCC 172140 Query 280173 GTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACC 280232 || | || || || ||||| |||||||| ||| | ||||| | ||||||| || | Sbjct 172141 GTTCTCGGTCCAAACGGTGCTGGTAAGTCGACCATGATCAAGATGTTGACTGGTGAAGTC 172200 Query 280233 CAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAG 280292 || | || ||| |||| ||||||||||| | | || | ||||||||||| ||| Sbjct 172201 GAGCCAACGTCGGGTACCGTGTGGAAGCATCCTGCCCTTCGTTTCGCTTACGTCGCCCAG 172260 Query 280293 CACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGG 280352 ||||||||||||||||| || | ||| ||||||| | | ||||| ||||| |||||| Sbjct 172261 CACGCTTTCCACCACATTGAAGAGCACTTGGACATCTCGGCCAACCAGTACATCCAGTGG 172320 Query 280353 CG 280354 || Sbjct 172321 CG 172322 >seq549 Length=149600 Score = 147 bits (162), Expect = 4e-30 Identities = 358/536 (67%), Gaps = 10/536 (2%) Strand=Plus/Minus Query 251844 GTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCC 251903 ||| ||||| || || |||||||| | |||||| || | | ||||||||||| | || Sbjct 88187 GTGGAGACCTTCATCACGACTGATAAGCTCGTTCGAGAAGCTGAGGCCAGGCATGAGACC 88128 Query 251904 ACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACA 251963 ||| ||| |||||||||||| | ||| || || || ||||| | | |||||| | Sbjct 88127 ACGCTTCTTGAGCCAGAAGACCGAGCAGAACGAACCCGAGAAGAAGATACCCTCAATGGC 88068 Query 251964 CACCCATGCAACAAGGCGCTCAGCAAACGACTTGTCCTGCGACA-AGAACTTCTGTGC-- 252020 | | || || | ||||||||||||| || || || | | | | | || Sbjct 88067 AGCGAAGGCGACGACACGCTCAGCAAACGCGGCGTTCTCTGAGTCACACCAGCGGAGCGC 88008 Query 252021 CCATGCTGCCTTCTT-TCCAACCGCG-GGGATTGTTTCGATTGCATCAAAGAGAGAGTTC 252078 ||| |||||||| | || ||| |||||||| || || || || | |||| Sbjct 88007 CCAGTTGGCCTTCTTCTGCA--CGCATGGGATTGTCTCAATGGCGCGGAACAAGTGGTTC 87950 Query 252079 CGCTCGGCATCGTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATG 252138 |||||| | |||| |||| || |||| || || |||||||| ||||| |||||| Sbjct 87949 TTCTCGGCGGCATCCTTGATGTACGTGTCAATCAACAGCGAGTACATTTCCGAGTGGATG 87890 Query 252139 GATTCGTTGAACATCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTG 252198 || || |||||| | | ||||| || || ||| | |||||| || Sbjct 87889 TTCTCAATGGCAATCTGGAAGCCGTAGAAGCAGCGGGCTTCAGGCACCTGGACTTCGTTG 87830 Query 252199 GAAAAGTTGTTTGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGA 252258 ||||| | |||| |||||| |||| || ||||| ||| | || ||||| | || Sbjct 87829 CTGAAGTTCATGGCAAGGTTCTCGTTCACAATACCATCACTGGCAGCGAAGAACGCGAGC 87770 Query 252259 ATGGTCTTGATGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCC 252318 | | |||||||||||||||||||| |||| | | ||| | |||||| | ||| Sbjct 87769 ACGTGCTTGATGAAGTGACGCTCATTGTCGGTCAAGTTG---CTCCAGTCCTTGAGGTCG 87713 Query 252319 TGATTCAGAGGAACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT 252374 || ||| | || || ||||||||||| ||| |||||||||||||||| Sbjct 87712 TGCACAAGATCGATCTCCTCGACCGTCCAGAAGCTGGCTTCCGCCTTCTTGTACAT 87657 >seq797 Length=162424 Score = 132 bits (146), Expect = 1e-25 Identities = 216/306 (71%), Gaps = 4/306 (1%) Strand=Plus/Minus Query 218528 ACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCCAGCGTGGTGG 218587 ||||||| |||||||| ||||| | || ||| || || || ||||| || | Sbjct 53750 ACAAGGAACTCATTCTATTCTCTAGAGCAGACAACTTGCGATCGATCCCAAGCGTTGTCG 53691 Query 218588 ATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTT-TGCCGCATTCAAGCGGAACCTGGTT 218646 |||| | |||||||| || |||||| | ||||| || | | ||| || |||||| Sbjct 53690 ATGGTTTTAAGCCATCTCAACGTAAGGTGCTCTTCTGTTGTCT-CAAACGAAACCTGAAG 53632 Query 218647 CAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCAC 218706 ||||| |||||||| || || || || || || || ||| | ||||||||| Sbjct 53631 ACGGAAATCAAGGTCGCCCAACTTGGAGGATACGTCTCGGAGCATTCGGCTTACCATCAC 53572 Query 218707 GGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAAC 218766 |||||| ||| | | ||| | ||||| |||||| || |||| |||||||| ||| Sbjct 53571 GGTGAGGCAAGTATCTACGGTACAATTGTCAACATGGCGCAAGACTTCGTGGGCAGCAAC 53512 Query 218767 AACATGAACTTGCTGCTCCCCAA-CGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGA 218825 ||||| || ||||| ||| |||| ||||||||| ||| | || | |||| || ||||| Sbjct 53511 AACATCAATTTGCT-CTCGCCAAACGGTCAGTTCGGTACGCGATTGATGGGAGGCAAGGA 53453 Query 218826 TAGTGC 218831 ||||| Sbjct 53452 CAGTGC 53447 >seq577 Length=114232 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||||||||||||||| | || |||| | |||||||||||||||||| Sbjct 114155 AGCCCGTCTAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAG 114214 Query 142563 CCCCAC 142568 |||||| Sbjct 114215 CCCCAC 114220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027823064567163