Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq308 176 8e-39 seq1035 152 9e-32 seq549 145 1e-29 seq148 134 3e-26 seq380 132 9e-26 seq561 111 3e-19 seq132 95.1 2e-14 seq797 84.2 4e-11 >seq308 Length=64091 Score = 176 bits (194), Expect = 8e-39 Identities = 324/470 (69%), Gaps = 4/470 (1%) Strand=Plus/Minus Query 268268 TCGACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGCGTCCATGTTCCCGAGGAACAGG 268327 ||||||||||| || || |||||||| |||||||| || | ||| || | | | || Sbjct 25654 TCGACATAGTCTTTGGCGTGCCCCCAATCACGCTTTGCATCTAGGTTTCCAATGTAAAGA 25595 Query 268328 CATTTCTGCTTGCCGAGCTTCACGCGTGCAAGACCGCGAGTGATTTTTCGGGTCACGAAC 268387 || | | | ||| || | || | | | | || ||||| || ||||| ||||| Sbjct 25594 CACTCTTCAATACCGGCCTGGATTCGGACTACAGCACGTGTGATCTTGCGGGTGACGAAT 25535 Query 268388 GTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGATGCCGTTGCAC-GCGAACATGCC 268446 || || || |||| ||||| || ||||| || || || || ||| ||| |||| || Sbjct 25534 GTTGGCCCTCGCCGAGGACTCTCATGATTGAACAGTATTCCATT-CACTGCGTACATTCC 25476 Query 268447 ATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAAACATCTTTGCAACTGCGTACGG 268506 || || ||||| ||||| ||||| |||| | ||||| ||||| || |||| || Sbjct 25475 GTAGGCTTCACGATAGTTGACGACACTCCAAAACGCAAATTGCTTTGAGACCCCGTAAGG 25416 Query 268507 AGAACGTGGATGGAAGGGCGTCGTGATCTTT-TGAGGGATTTCTCGGACTTTGCCAAAGA 268565 || ||||||| ||| ||||| | | || | ||||| | || | ||||||| | | Sbjct 25415 CGAGCGTGGATAGAACGGCGT-GAGTTCACTCTGAGGCGTCACTTGCGCTTTGCCGTACA 25357 Query 268566 GCTCGGAGGTCGATGCTTGGTAGAACTTTGTTGTTTTTTCGAGACCGCAGATTCGGATTG 268625 ||||| || || |||||||||||||| || ||||| || | || || | ||||| Sbjct 25356 GCTCGCTCGTAGAAGCTTGGTAGAACTTGGTGGTTTTCTCCATCCCACACGTGCGGATAC 25297 Query 268626 CCTCGAGCAAACGAAGAGTTCCCATGCCATCCACGTCCGCTGTATACTCCGGCATCTCGA 268685 | |||||| || | || || | |||| || |||||||| || |||| |||||| | Sbjct 25296 AGTTGAGCAATCGCAACGTACCGAGTGCATCAACATCCGCTGTGTATTCCGACATCTCAA 25237 Query 268686 ATGACACCTGGACATGGCTCTGGGCGCCCAGGTTATAAACCTCATCCGGT 268735 | || |||| |||||| | || ||| ||| || | |||||||||| Sbjct 25236 ACGAGACCTTGACATGTGACATCGCTGCCAAGTTGTAGATCTCATCCGGT 25187 >seq1035 Length=208423 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | |||||||| | || ||||| || |||||||| || || ||| Sbjct 98348 CCACCACGAAGACGGAGCACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCCGAG 98407 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| || || | || ||||| |||||| Sbjct 98408 AGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGA 98467 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||| || ||||| ||||||| || ||| |||| | || || || Sbjct 98468 ATTCCTTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCAATGCTGTCCGATGGCTCGACA 98527 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || ||||| || ||||| || || |||||||| Sbjct 98528 TCGAGCGTGATGGTCTTGCCCGTCAGAGTCTTCACAAAGATCTGCAT 98574 >seq549 Length=149600 Score = 145 bits (160), Expect = 1e-29 Identities = 554/863 (64%), Gaps = 34/863 (4%) Strand=Plus/Minus Query 9938 GACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGAG 9997 ||| |||||||| ||| || || || |||||||||||||| |||||||| ||| Sbjct 88502 GACACCCGCCTTGGAGTATTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAG 88443 Query 9998 GGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACCGAG 10057 || || | ||||| ||||||| ||||| ||| | ||| | | ||| || Sbjct 88442 CGAGATCATATCCATCCAGTCAAATGGGTTGGACGCGTTGTAGATCTTCGAGACACCAAG 88383 Query 10058 TGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTTCAT 10117 || || || || ||||| ||||||||||||||||||| ||| || |||||||||| Sbjct 88382 AGCGTGGAGAAGACGATCAGCGACGAACTCGATGTACTGGCACATGAGCGCCGAGTTCAT 88323 Query 10118 GCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGCTTC 10177 || || | | |||| | ||| | ||| ||||| ||| | | ||| || || Sbjct 88322 ACCGATAAGCTCGACTGGGAGCGAGTCCTTGACGAACTCCTTCTCGATCGTGACGGCATC 88263 Query 10178 CTCGACGATGCTC-----TTTACCACGTCAAGG-GAC--------AGCTTGTTCTCGAGC 10223 ||| || ||| || | || || || ||| |||||||| | |||| Sbjct 88262 ACTGACAAT-CTCGTGGATTCGCGAC-TCTGGGAGACGGTTAACAAGCTTGTTGTAGAGC 88205 Query 10224 TTCGAATACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCG 10283 | |||| | || | |||||| || || || || ||||| | |||| Sbjct 88204 -----AAGCAGG-------CGAAGTCACAGTGGAGACCTTCATCACGACTGATAAGCTCG 88157 Query 10284 TTGGACAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAAC 10343 || || || | || || |||||||| || || || |||||||| | | ||||||| Sbjct 88156 TTCGAGAAGCTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGACCGAGCAGAAC 88097 Query 10344 GACCCGGAGAACAGAAGACCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAA-GGA 10402 || || ||||| | | |||||| | | | ||||||||| ||||| || || | Sbjct 88096 GAACCCGAGAAGAAGATACCCTCAATGGCAGCGAAGGCGACGACACGCTCAGCAAACGCG 88037 Query 10403 GCGGTCGC-GCGAAAAGTATTTCGAG-GCCCACGCTGCCTTCTTTCCCACGGCAGGGATC 10460 ||| || | | | | ||| ||||| |||||||| |||| ||||| Sbjct 88036 GCGTTCTCTGAGTCACACCAGCGGAGCGCCCAGTTGGCCTTCTTCTGCACGCATGGGATT 87977 Query 10461 GTCTCGATAGCCTCGAAGAGCTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCAAGG 10520 ||||| || || ||| | | ||| ||||| | |||| || | |||| Sbjct 87976 GTCTCAATGGCGCGGAACAAGTGGTTCTTCTCGGCGGCATCCTTGATGTACGTGTCAATC 87917 Query 10521 AGCAGGGAGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAACATA 10580 | ||| ||||| || ||||| | ||||| || |||| | ||||||| Sbjct 87916 AACAGCGAGTACATTTCCGAGTGGATGTTCTCAATGGCAATCTGGAAGCCGTAGAAGCAG 87857 Query 10581 CGTGCCGAGGGGTCCGTGACTTCCTCGGCAAAGTTGTTGTTCAGGTTCTCCATCACCATG 10640 || || || || |||||| | | ||||| || |||||||| |||| || Sbjct 87856 CGGGCTTCAGGCACCTGGACTTCGTTGCTGAAGTTCATGGCAAGGTTCTCGTTCACAATA 87797 Query 10641 CCATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTC 10700 ||||| ||| | || ||||| |||| | ||||||||||||||| ||||||| ||| || Sbjct 87796 CCATCACTGGCAGCGAAGAACGCGAGCACGTGCTTGATGAAGTGACGCTCATTGTCGGTC 87737 Query 10701 AGTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGAAA 10760 | || | |||||| | || || || | || |||||| || |||||||| Sbjct 87736 AAGTT---GCTCCAGTCCTTGAGGTCGTGCACAAGATCGATCTCCTCGACCGTCCAGAAG 87680 Query 10761 GTGGCAACGGCCTTCTTGTACAT 10783 |||| | |||||||||||||| Sbjct 87679 CTGGCTTCCGCCTTCTTGTACAT 87657 >seq148 Length=18536 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | |||||||| | ||| ||||| || |||||||| || || ||| Sbjct 94 CCACCACGAAGGCGGAGCACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAGTCCGAG 153 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || ||||| || | || || || || || ||| Sbjct 154 AGGGTACGGCCGTCCTCGAGCTGCTTGCCAGCGAAAATCAATCGCTGCTGATCTGGAGGA 213 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| || ||||| ||||||| ||||| | ||| | | || || Sbjct 214 ATGCCTTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCGACG 273 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || ||||| || || || | ||||| ||||| |||||||| Sbjct 274 TCGAGAGTAATGGTCTTGCCGGTCAACGTCTTCACGAAGATCTGCAT 320 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || | ||| | |||||||| | ||| ||||| || |||||||| || || ||| Sbjct 18521 CCACCACGCAAGCGGAGCACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAGTCCGAG 18462 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || || || || | | || || || || ||| Sbjct 18461 AGGGTACGGCCGTCCTCGAGCTGCTTACCAGCAAAGATCAAACGCTGCTGATCTGGAGGA 18402 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||| || ||||| |||||| ||||| | ||||| | || || Sbjct 18401 ATACCTTCCTTGTCCTGGATCTTCTGCTTGACATTGTCGATCGAGTCTGAAGGCTCGACG 18342 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || ||||| || || ||||| ||||||||||| |||||||| Sbjct 18341 TCCAACGTAATGGTCTTGCCGGTGAGTGTCTTGACGAAGATCTGCAT 18295 >seq380 Length=22246 Score = 132 bits (146), Expect = 9e-26 Identities = 300/444 (68%), Gaps = 9/444 (2%) Strand=Plus/Minus Query 173032 CAATTTCAAGTTCGTCAAGGGAGATATTCAATCTACTGATCTCCTGGCGCACGTCCTGAA 173091 ||| | ||||||| ||||||| | || | | || ||| | | | || |||| | Sbjct 21172 CAACTACAAGTTCATCAAGGGCAACATCATGTGCGCCGACCTCGTCGAGTACATCCTCCA 21113 Query 173092 GCAGGAAAAAATTGACACGATTATGCACTTTGCTGCGCAGACCCATGTGGACAACTCGTT 173151 | ||| | || || ||||| ||||||||||||||||| | |||||||| ||| || Sbjct 21112 GACGGAGCAGATCGATACGATCCTGCACTTTGCTGCGCAGTCGCATGTGGATCTCTCCTT 21053 Query 173152 CGGTAACTCGCTGGCATTTACCATGAACAACGTCTACGGGACCCACGTTCTCCTGGAATG 173211 || |||||| | | || ||| || |||| || |||||| ||||| || || || Sbjct 21052 TGGCAACTCGATCGAGTTCTCCAAGACCAACATCCTCGGGACGCACGTGCTGCTAGAGGC 20993 Query 173212 CGCGAGGCTCTATGGCGGTGTCCAGCGGTTCATCAATGTGTCTACCGACGAAGTATACGG 173271 ||| | | | ||||| ||||||| |||||| | ||| |||||||||||| ||||| Sbjct 20992 CGCTCGCATTCACGGCGGCATCCAGCGCTTCATCCACGTGAGTACCGACGAAGTGTACGG 20933 Query 173272 CGAGAGCAGTCTGGGCAAAAAAGAAGGCCTCGATGAA--CACTCGTCCCTCGAGCCAACA 173329 ||| || | | ||| | | | ||| || | | | ||| || ||||| || Sbjct 20932 CGA-AGGAAT---GGCCGACACGGCGGCGATGACGGAGGATCACGT-GCTGGAGCCCACG 20878 Query 173330 AACCCATATGCAGCAGCCAAGGCTGGTGCCGAAAT-GATGGCACGTGCATATCACACATC 173388 ||||| || || || | || || || ||||| | || || | || || || || Sbjct 20877 AACCCGTACGCCGCGACGAAAGCCGGCGCCGAGTTCCTTGTCAAG-GCGTACCAGCGCTC 20819 Query 173389 GTACAAGCTACCAGTCATCGTGACGCGCGGCAACAATGTGTATGGCCCGCATCAGTTCCC 173448 || |||||| || |||| | |||||| | ||||| || ||||| || ||||||| ||| Sbjct 20818 GTTCAAGCTGCCGACCATCATCACGCGCAGTAACAACGTCTATGGGCCACATCAGTACCC 20759 Query 173449 CGAAAAAATGATCCCAAAATTTAT 173472 || || | ||||| || || || Sbjct 20758 GGAGAAGCTCATCCCCAAGTTCAT 20735 >seq561 Length=342854 Score = 111 bits (122), Expect = 3e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||||||||||||||| | ||||||| ||| | ||||| ||||||||||| Sbjct 172322 CGCCACTGGATGTACTGGTTGGCCGAGATGTCCAAGTGCTCTTCAATGTGGTGGAAAGCG 172263 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100 |||||||| ||||| || | || | | |||||||||||||| | ||| || || Sbjct 172262 TGCTGGGCGACGTAAGCGAAACGAAGGGCAGGATGCTTCCACACGGTACCCGACGTTGGC 172203 Query 225101 TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAATC 225160 | | || || || | | |||||| | || | ||| || ||||| || || || | Sbjct 172202 TCGACTTCACCAGTCAACATCTTGATCATGGTCGACTTACCAGCACCGTTTGGACCGAGA 172143 Query 225161 ACGCCAATCCGGGA 225174 ||| |||| ||||| Sbjct 172142 ACGGCAATACGGGA 172129 Score = 96.9 bits (106), Expect = 6e-15 Identities = 162/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 224437 GAATTCAGTGCTGTGAGAAATAACTACTACACCGCCGCCGAATGACTCAAGG---GCGGA 224493 ||| || || |||| || || | || ||||| ||| ||| |||| || || | Sbjct 172878 GAACTCGTTGTTGTGCGAGATCATGACGACACCACCGTTGAA---CTCACGGATGGCAGT 172822 Query 224494 TGAAAGCGCGCCAAGCGACTCGCGGTCAAGGAAGTTCGTCGGCTCATCCAGGATGATAAC 224553 | ||| || || ||||| || ||||| | | |||| || || ||||| || | | || Sbjct 172821 GGCAAGAGCTCCGAGCGAGTCACGGTCCAAGTAGTTAGTAGGTTCATCGAGCACAAGAAT 172762 Query 224554 GTGGGGGCACTGCCACAGGGCTGCACCAACCACCAGCTTCACCTTCTGACCGCCAGAGAG 224613 ||| ||| |||||| ||| ||||| | ||| | ||||||||||||||| || || || Sbjct 172761 GTGAGGGTTGAGCCACATGGCGGCACCCAACACAACCTTCACCTTCTGACCACCCGAAAG 172702 Query 224614 GCCGCGGATCCGCGAGTGAGTCGTGAATTCGGGGTCAAGACCAATCTTGGCCA 224666 || || || |||||||| || ||| || | | ||||||| | ||| ||| Sbjct 172701 ACCACGCATACGCGAGTGGGTACCGAACTCAGCGCCAAGACCGAAGTTGTCCA 172649 >seq132 Length=57701 Score = 95.1 bits (104), Expect = 2e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||| || ||||| |||||| || ||| |||| | || ||| || Sbjct 10043 ATACCTTCCTTGTCCTGGATCTTCTGCTTGACATTGTCAATGCTGTCGGATGGTTCAACA 10102 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||||||| || |||||||||||||| ||||| |||||||| Sbjct 10103 TCCAGGGTGATGGTCTTCCCCGTGAGGGTCTTCACGAAGATCTGCAT 10149 >seq797 Length=162424 Score = 84.2 bits (92), Expect = 4e-11 Identities = 190/279 (68%), Gaps = 5/279 (2%) Strand=Plus/Plus Query 176236 GTTGTGTGAAGATATACCTAGCAGACGCACTGTCCTTGCCTCCGTGAAGGCGGGAACCGA 176295 |||| |||||||| || | || ||||||||||||||||| | || | ||||| Sbjct 53422 GTTG-GTGAAGATGTAACGAGGGCTTGCACTGTCCTTGCCTCCCATCAATCGCGTACCGA 53480 Query 176296 ATTGTCCGCGAGGAAGAAGCAAATTGATGTTATTCGAACCCACGTAGTCTTGGGCCATTC 176355 | || ||| || |||||||||||||| || |||||| ||||||| ||||| Sbjct 53481 ACTGACCGTTTGGCGAGAGCAAATTGATGTTGTTGCTGCCCACGAAGTCTTGCGCCATGT 53540 Query 176356 CGACTATGGCGCCCTGGAGAGACGCCTCGCCGTGGTGATAGCCGGCGTTCTCACTTGTGT 176415 ||| || | || | || | ||||| ||||| || || | | | ||| || Sbjct 53541 TGACAATTGTACCGTAGATACTTGCCTCACCGTGATGGTAAGCCGAATGCTCCGAGACGT 53600 Query 176416 ATCCGGCAAACTGCGCGACTTTGATTT-CTTGTACGAGGTTGCGCTTCA-ACGCCGAGAA 176473 |||| ||| || ||||| ||||||| | | | | ||||| || || | || | |||| Sbjct 53601 ATCCTCCAAGTTGGGCGACCTTGATTTCCGTCTTC-AGGTTTCGTTTGAGACAAC-AGAA 53658 Query 176474 CAGAATCTTCCGCTGCGAGGGCTTCAGACCATCGACGAC 176512 || | ||| || || || ||||| | ||||||||| || Sbjct 53659 GAGCACCTTACGTTGAGATGGCTTAAAACCATCGACAAC 53697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921610384347960