Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq549 298 1e-75 >seq549 Length=149600 Score = 298 bits (330), Expect = 1e-75 Identities = 587/855 (69%), Gaps = 15/855 (2%) Strand=Plus/Plus Query 42284 GATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGC 42343 |||| || | |||| |||||| ||||||||||||||| | | | |||||| | Sbjct 87632 GATCCAGGAGAAGGAGATCTGGGATATGTACAAGAAGGCGGAAGCCAGCTTCTGGACGGT 87691 Query 42344 CGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACT-GTCTGAGAACGAAA 42402 ||||||||| || || | | ||| | |||| || ||| | | || || || Sbjct 87692 CGAGGAGATCGATCTTGTGCACGACCTCAAGGACTGG-AGCAACTTGACCGACAATGAGC 87750 Query 42403 AGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGA 42462 ||| |||| || | || || |||||||| ||| ||| || || || || |||| Sbjct 87751 GTCACTTCATCAAGCACGTGCTCGCGTTCTTCGCTGCCAGTGATGGTATTGTGAACGAGA 87810 Query 42463 ACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCT 42522 |||| |||| | |||| || || || ||| ||| || |||||||||||||||| Sbjct 87811 ACCTTGCCATGAACTTCAGCAACGAAGTCCAGGTGCCTGAAGCCCGCTGCTTCTACGGCT 87870 Query 42523 TCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACA 42582 ||||||| ||||| |||||| | ||||| || ||||| | || | ||||||||| Sbjct 87871 TCCAGATTGCCATTGAGAACATCCACTCGGAAATGTACTCGCTGTTGATTGACACGTACA 87930 Query 42583 TCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCA 42642 || |||| ||| |||| ||| ||||| ||||| ||||| || || ||| | Sbjct 87931 TCAAGGATGCCGCCGAGAAGAACCACTTGTTCCGCGCCATTGAGACAATCCCATGCGTGC 87990 Query 42643 AGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTC--CCGACGCAACGTTCGGCGA 42700 |||||||||| ||||||||||| |||| | || || |||| |||| | || Sbjct 87991 AGAAGAAGGCCAACTGGGCGCTCCGCTGG--TGTGACTCAGAGAACGCCGCGTTTGCTGA 88048 Query 42701 GAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCAT 42760 | | | || ||||| | ||| | ||||| |||||||||||||| | ||| ||| | Sbjct 88049 GCGTGTCGTCGCCTTCGCTGCCATTGAGGGTATCTTCTTCTCGGGTTCGTTCTGCTCGGT 88108 Query 42761 CTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCA 42819 ||||||||||||| || ||| || ||||| || |||| |||||||||||| || |||| Sbjct 88109 CTTCTGGCTCAAGAAGCGTGGTCTC-ATGCCTGGCCTCAGCTTCTCGAACGAGCTTATCA 88167 Query 42820 GCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGC 42879 | | || || || || || | ||||| ||||| | || ||| | | | || Sbjct 88168 GTCGTGATGAAGGTCTCCACTGTGACTTCGCCTG---CTTGCTCTACAACAAGCTTGTTA 88224 Query 42880 ACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGG 42939 || | | | || ||| ||| | || ||| || ||||| ||||||||||| Sbjct 88225 ACCGTCTCCCAGAGTCGCGAATCCACGAGATTGTCAGTGATGCCGTCACGATCGAGAAGG 88284 Query 42940 AGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCA 42999 ||||| ||| | | ||||| || || || |||| |||||| | ||||||||| Sbjct 88285 AGTTCGTCAAGGACTCGCTCCCAGTCGAGCTTATCGGTATGAACTCGGCGCTCATGTGCC 88344 Query 43000 AGTACATCCAGTACGTCGCCGACCATCTCCTGTGC-CAGATGG-GTCTCAGCCGCCTCTA 43057 |||||||| ||| |||||| || | ||| || | | ||| ||||| | | |||| Sbjct 88345 AGTACATCGAGTTCGTCGCTGATCGTCTTCTCCACGCTCTTGGTGTCTC-GAAG-ATCTA 88402 Query 43058 CAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTT 43117 |||| || | ||| || |||| ||||| | |||||| | |||||||||||||||| Sbjct 88403 CAACGCGTCCAACCCATTTGACTGGATGGATATGATCTCGCTCCAGGGCAAGACCAACTT 88462 Query 43118 TTTCGAGAAGCGCGT 43132 ||||||||||| || Sbjct 88463 CTTCGAGAAGCGTGT 88477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944326888177680