Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq272 87.8 2e-12 >seq272 Length=54113 Score = 87.8 bits (96), Expect = 2e-12 Identities = 197/296 (67%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 20134 CGGAAAGGGACGTGGAGTGCGCGTCAGCTGCAGCCGTAGTGGCTCTATATGCGTTTTGTA 20193 ||| || ||||| |||||||| || ||| | | || ||||| | || | ||| Sbjct 10213 CGGGAACGGACGAGGAGTGCGTCCCAACTGGATCTTGAGCGGCTCGAGGTGGTTCAAGTA 10272 Query 20194 GATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATGAGC 20253 |||||| ||||| || | || | || || |||| | || |||| || ||||| Sbjct 10273 GATGTGTGCATCACCAATGACATGGACGAAGTCACCGGCCTTGAGCCCAGCGACCTGAGC 10332 Query 20254 AAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTC 20313 | || || || | | || ||||| || ||||| || || || | |||||||| Sbjct 10333 GATCAATCGGGTCAACAACGCGTAACTGGCGATATTAAACGGCACACCGAGGCCCATGTC 10392 Query 20314 TCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGACATAA 20373 |||| | ||| |||| || || || ||||| || | || || || || || || || Sbjct 10393 AGCCGATCGCTGGTACATTTGGCACGAGAGCTCGCCATTCGCGACGTAGAACTGGCAGAA 10452 Query 20374 CAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACACA 20429 || ||| || || |||||||||||| | | ||| || || ||||| ||| ||| Sbjct 10453 CATGTGGCACGGAGGAAGCGCCATCTCCTTGAGGTCTGCTGGATTCCATGCAGACA 10508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441367045602120