Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq549 118 2e-21 seq561 91.5 3e-13 seq806 87.8 4e-12 >seq549 Length=149600 Score = 118 bits (130), Expect = 2e-21 Identities = 561/880 (64%), Gaps = 40/880 (5%) Strand=Plus/Plus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 ||||| |||||| | ||| || ||||||||||| |||||||| | || | ||| ||| Sbjct 87627 TTCCCGATCCAGGAGAAGGAGATCTGGGATATGTACAAGAAGGCGGAAGCCAGCTTCTGG 87686 Query 242935 ACCACCGAGGAAGT---TCCTCTGAACGCAGACGTCGTCGACTGGCGCGAGAAACTCAAT 242991 || |||||| | || | || ||| || || |||||| || || | | Sbjct 87687 ACGGTCGAGGAGATCGATCTTGTGCACG---ACCTCAAGGACTGGAGC---AACTTGACC 87740 Query 242992 GACGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATT 243051 ||| | || ||||| |||||||| ||| | || | || ||||| | | ||||||||| Sbjct 87741 GACAATGAGCGTCACTTCATCAAGCACGTGCTCGCGTTCTTCGCTGCCAGTGATGGTATT 87800 Query 243052 GTGATGGAAAATCTGCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAA 243111 |||| || || || | ||||| || ||||| ||| || || || || Sbjct 87801 GTGAACGAGAACCTTGCCATGAACTTCAGCAACGAAGTCCAGGTGCCTGAAGCCCGCTGC 87860 Query 243112 TTTTATGCTTACCAAA----CATTCAACGAATCTATCCATTCTGAACAATATGCTCTTCT 243167 || || | | ||| | |||| | ||| ||||| || ||| || | || | Sbjct 87861 TTCTACGGCTTCCAGATTGCCATTGA--GAAC--ATCCACTCGGAAATGTACTCGCTGTT 87916 Query 243168 TATCGACGCGCTTATTTCA--GATGAACAAGAGCGAAACGAGCTTTTCGACGCCATCGAA 243225 || ||| || || ||| |||| ||| ||| | | ||| |||||| || Sbjct 87917 GATTGACACG--TACATCAAGGATGCCGCCGAGAAGAACCACTTGTTCCGCGCCATTGAG 87974 Query 243226 AACATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCA-----GAAGTGGCT---AGAAC 243277 | || || || || || ||||| || ||||| | | ||| || ||||| Sbjct 87975 ACAATCCCATGCGTGCAGAAGAAGGCCAACTGGGCGCTCCGCTGGTGTGACTCAGAGAAC 88034 Query 243278 CCGGTAAATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTT 243337 | | | |||||||||||| ||||||||| | | |||| ||||| | || | Sbjct 88035 GCCG-----CGTTTGCTGAGCGTGTCGTCGCCTTCGCTGCCATTGAGGGTATCTTCTTCT 88089 Query 243338 CCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTC 243397 | || |||||| | |||| ||||| ||| ||| | |||||||||||| | Sbjct 88090 CGGGTTCGTTCTGCTCGGTCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGCCTCAGCT 88149 Query 243398 TGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTA-TG 243456 | || |||||| | |||||||| || || || || ||| | |||| |||| | Sbjct 88150 TCTCGAACGAGCTTATCAGTCGTGATGAAGGTCTCCACTGTGACTTCGCCT-GCTTGCTC 88208 Query 243457 TATTCAAAGCTCCAGAACAAGCTACCAT--TCGAAACGGTCAAACAAATCATCACAGAAG 243514 || ||||| ||| || ||| ||| | || | | || ||| || | Sbjct 88209 TACAACAAGCTTGTTAACCGTCTCCCAGAGTCGCGAA--TCCACGAGATTGTCAGTGATG 88266 Query 243515 CAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGA 243574 | || | ||| ||||| ||| | ||| | | ||| | |||||| || |||| Sbjct 88267 CCGTCACGATCGAGAAGGAGTTCGTCAAGGACTCGCTCCCAGTCGAGCTTATCGGTATGA 88326 Query 243575 ACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTG 243634 |||| | |||||| | ||||||||||| ||||| || || || || || ||| |||| Sbjct 88327 ACTCGGCGCTCATGTGCCAGTACATCGAGTTCGTCGCTGATCGTCTTCTCCACGCTCTTG 88386 Query 243635 GTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTC 243694 || ||| | |||||| | ||||| |||| || ||||| | || ||||| | Sbjct 88387 GTGTCTCGAAGATCTACAACGCGTCCAACCCATTTGACTGGATGGATATGATCTCGCTCC 88446 Query 243695 AAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTA 243734 | || || || ||||||||||| |||||||| |||| || Sbjct 88447 AGGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGAATA 88486 >seq561 Length=342854 Score = 91.5 bits (100), Expect = 3e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 333315 TCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGA 333374 || ||||| |||||||| ||||||| ||||| |||||||||| | ||||| | Sbjct 172346 TCCTTGTCCTCACCGGACTGGAAACGCCACTGGATGTACTGGTTGGCCGAGATGTCCAAG 172287 Query 333375 TGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 333434 || || || |||||||||||||| ||||| || |||||||| | ||| | |||||| Sbjct 172286 TGCTCTTCAATGTGGTGGAAAGCGTGCTGGGCGACGTAAGCGAAACGAAGGGCAGGATGC 172227 Query 333435 TTCCAAAC 333442 ||||| || Sbjct 172226 TTCCACAC 172219 >seq806 Length=732016 Score = 87.8 bits (96), Expect = 4e-12 Identities = 224/338 (66%), Gaps = 6/338 (2%) Strand=Plus/Minus Query 297437 GTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGG 297496 ||||| || || || | |||||| ||||||||||||||| | || || |||||| || Sbjct 455160 GTGAAGATGTAACGAGGACTCGCAGCATCCTTACCACCCTGAAGTCGCGTACCGAATTGA 455101 Query 297497 CCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACG 297556 ||| || | | | | | ||| || || || || ||||| || | ||||| Sbjct 455100 CCCGAAGGGTAGAGCAATGGCAAGTTGTTCGCACCAACGTAGTCCTGCGCCATATTCACA 455041 Query 297557 ATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCG 297616 || || || || |||||||| || ||||| || || ||||||| | |||||| Sbjct 455040 ATTGTTGAGTGAAGTGATGCTTCACCGTGGTGGTATGCCGTATGCTCACTACAGTAACCC 454981 Query 297617 CTGAACTGTGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGA---AAGCTGAATATATC 297673 || ||| || ||||| || || |||| | || ||||||| |||| || | | | Sbjct 454980 GCGAGCTGCGCCACCTTGACTTCCTTCGTGAGTTTTCGCTTGAGACAAGC-GA--ACAAC 454924 Query 297674 ACTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAATGCTTCGTTCCAGATCG 297733 || || || || || |||| |||||||| || || |||| ||| | ||| Sbjct 454923 ACCTTACGCTGTGATACCTTGAGACCATCAATAACGGATGGAAGCGATCGAGCATTGTCG 454864 Query 297734 TACCGCGAGAACAAAATAAGTTCCTTGTCGATGAAGTC 297771 |||||||| || || ||||||| || |||||| Sbjct 454863 GCATGCGAGAACTGGATCAGCTCCTTGTTGACGAAGTC 454826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102865261732050