Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq549 205 1e-47 seq797 100 3e-16 >seq549 Length=149600 Score = 205 bits (226), Expect = 1e-47 Identities = 558/848 (66%), Gaps = 10/848 (1%) Strand=Plus/Minus Query 125752 CTTGCCGTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATT 125811 |||| ||| || ||||| ||||||||||||||||| ||||| || | | ||| | Sbjct 88493 CTTGGAGTATTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCAT 88434 Query 125812 CTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAG 125871 ||||| | ||||||||||| | ||| | || | | || |||| | ||| Sbjct 88433 ATCCATCCAGTCAAATGGGTTGGACGCGTTGTAGATCTTCGAGACACCAAGAGCGTGGAG 88374 Query 125872 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG 125931 |||||||| | |||| |||| ||||||| |||| | | |||||||||||||| || Sbjct 88373 AAGACGATCAGCGACGAACTCGATGTACTGGCACATGAGCGCCGAGTTCATACCGATAAG 88314 Query 125932 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGAT 125991 | |||||||| |||| || |||| ||||||| || ||||| || | || || Sbjct 88313 CTCGACTGGGAGCGAGTCCTTGACGAACTCCTTCTCGATCGTGACGGCATCACTGACAAT 88254 Query 125992 GGCGTGAATGGTGTCCACCCCAGGT--CTATTGCGCAAAGTCTTGAAGAGTTCCACGGCA 126049 |||| || | | || | || | || | | ||| |||| ||| Sbjct 88253 CTCGTGGAT--TCGCGACTCTGGGAGACGGTTAACAAGCTTGTTGTAGAGCAAGCAGGCG 88196 Query 126050 AACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGC 126109 || || ||||||||| || ||||| ||| || || |||||||||| || || ||| Sbjct 88195 AAGTCACAGTGGAGACCTTCATCACGACTGATAAGCTCGTTCGAGAAGCTGAGGCCAGGC 88136 Query 126110 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCC 126169 |||||||| |||||||| | |||||| | || || || ||||||||||||||||| ||| Sbjct 88135 ATGAGACCACGCTTCTTGAGCCAGAAGACCGAGCAGAACGAACCCGAGAAGAAGATACCC 88076 Query 126170 TCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCG-ACTTTGTGTCAAACCA 126228 || | ||||| || | || |||||||||||| | | ||| || || |||| |||| Sbjct 88075 TCAATGGCAGCGAAGGCGACGACACGCTCAGCAAACGCG-GCGTTCTCTGAGTCACACCA 88017 Query 126229 CTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAG 126288 | |||||| | ||||| |||| | || |||| |||| || || || | Sbjct 88016 GCGGAGCGCCCAGTTGGCCTTCTTCTGCACGCATGGGATTGTCTCAATGGCGCGGAACAA 87957 Query 126289 TTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCC 126348 | ||||| || | | ||| ||||||||| | || || | || || |||| Sbjct 87956 GTGGTTCTTCTCGGCGGCATCCTTGATGTACGTGTCAATCAACAGCGAGTACATTTCCGA 87897 Query 126349 GTGGACCATTTCATTATGGCA--CTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGT 126406 ||||| | ||| |||||| ||| | ||||||| |||| ||||| | ||| Sbjct 87896 GTGGATGTTCTCA--ATGGCAATCTGGAAGCCGTAGAAGCAGCGGGCTTCAGGCACCTGG 87839 Query 126407 ACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAA 126466 || || | | || || | | ||||| ||||| ||||| |||| || Sbjct 87838 ACTTCGTTGCTGAAGTTCATGGCAAGGTTCTCGTTCACAATACCATCACTGGCAGCGAAG 87779 Query 126467 AACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCAGTCGTCA 126526 ||||| || | | ||| ||||| | | ||||| ||| ||| | | ||||||| | Sbjct 87778 AACGCGAGCACGTGCTTGATGAAGTGACGCTCATTGTCGGTCAAGTTGCTCCAGTCCTTG 87719 Query 126527 AGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCAATTGCTCATTTGAGCCTTCTTATAG 126586 || || | | ||||| | |||||| | ||||| ||| || |||||||| || Sbjct 87718 AGGTCGTGCACAAGATCGATCTCCTCGACCGTCCAGAAGCTGGCTTCCGCCTTCTTGTAC 87659 Query 126587 AGTTCCCA 126594 | ||||| Sbjct 87658 ATATCCCA 87651 >seq797 Length=162424 Score = 100 bits (110), Expect = 3e-16 Identities = 256/379 (68%), Gaps = 18/379 (5%) Strand=Plus/Plus Query 171726 AACCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGA 171785 |||| || ||||||||||| | ||||| || ||||||||||| | ||| | ||| Sbjct 53271 AACCAGTACCAATACCTTCACTACCGTTGACAAGAACCATTGGGATGACTGGAACATACC 53330 Query 171786 AGTCTGGTTCAATCGCACGCCCATCATCATCCAAATAGTTGAGCACGGGGTCGTCCCTCG 171845 | || ||||| |||| | |||||||| || | |||||||| || || ||| | Sbjct 53331 ACTCAGGTTCGATCGATTGACCATCATCGTCAAGGTAGTTGAGAACATCGTTATCCAGTG 53390 Query 171846 GATCAAAGATTTTACGAGCATCCTTGGT--GAGTTTTGTGAAGATGTACC--TCGTTTGA 171901 |||| |||| |||||| ||| ||| || ||||||||||| | | ||| Sbjct 53391 GATCGAAGAGGCATCGAGCA--AGAGGTTCGAGGTTGGTGAAGATGTAACGAGGGCTTG- 53447 Query 171902 GACGCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACACGGTTCAAGGAGATTG 171961 || || ||||| ||||| | ||||| || || ||||| || || | |||| Sbjct 53448 CAC-TGTCCTTGCCTCCCATCAATCGCGTACCGAACTGACCGTTTGGCGAGAGCAAATTG 53506 Query 171962 ATATTGTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGTATCCGCGAGGGAGACT 172021 || ||||| |||| | |||| | |||| |||||||| ||| ||| || ||| Sbjct 53507 ATGTTGTTGCTGCCCACGAAGTCTTGCGCCATGTTGACAATTGTA-CCG---TAGATACT 53562 Query 172022 ----TCACCGTGATGGTAGGCCGACTTGTCCGCGACATACGCCGCCAA-CTGTGCCACCT 172076 |||||||||||||| ||||| | |||| ||| || || |||| || || |||| Sbjct 53563 TGCCTCACCGTGATGGTAAGCCGAATGCTCCGAGACGTA-TCCTCCAAGTTGGGCGACCT 53621 Query 172077 TCATCTCATCCTTGAGGTT 172095 | || || ||| ||||| Sbjct 53622 TGATTTCCGTCTTCAGGTT 53640 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 173688 TCACGATGGAAAACTCCGAAGAATAGATGTTCGTCAACTTGGCACCGTAGCCATTGCGTC 173747 || ||| || || |||| || |||| || ||||||||||||||||| || || || | Sbjct 55410 TCTCGACGGTGAATTCCGTGGAGAAGATATTGGTCAACTTGGCACCGTAACCGTTTCGAC 55469 Query 173748 CACCAACAATTCTCTTCTTGTTGTCATCGTAGTTTGTACTCGTGAGGAGGTGACCAAATG 173807 |||| ||| | |||| |||| ||| ||| |||| | | || | |||||||||||| Sbjct 55470 CACCGACAGTCTTCTTTTTGTCGTCGTCGAAGTTACTTCCGGTCAAGAGGTGACCAAAGA 55529 Query 173808 TAAGTTCTGGA 173818 | ||||| ||| Sbjct 55530 TGAGTTCCGGA 55540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597345812002440