Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq148 143 3e-29 seq549 82.4 7e-11 >seq148 Length=18536 Score = 143 bits (158), Expect = 3e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||| || | ||||||||| || || || ||||| || Sbjct 94 CCACCACGAAGGCGGAGCACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAGTCCGAG 153 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || ||||| || |||||| | ||||||||||||||||| ||||| Sbjct 154 AGGGTACGGCCGTCCTCGAGCTGCTTGCCAGCGAAAATCAATCGCTGCTGATCTGGAGGA 213 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||| ||||||||| ||| |||||||||| |||| |||| | ||||| | |||||| Sbjct 214 ATGCCTTCCTTGTCCTGGATCTTCTGCTTGACGTTG-TCGATCGAGTCCGAAGGCTCGAC 272 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | || |||||||||| || || || || |||||||| Sbjct 273 GTCGAGAGTAATGGTCTTGCCGGTCAACGTCTTCACGAAGATCTGCAT 320 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || || || | |||||| || | ||||||||| || || || ||||| || Sbjct 18521 CCACCACGCAAGCGGAGCACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAGTCCGAG 18462 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || ||||| || ||||| ||||||| ||||||||||| ||||| Sbjct 18461 AGGGTACGGCCGTCCTCGAGCTGCTTACCAGCAAAGATCAAACGCTGCTGATCTGGAGGA 18402 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || ||||||||| ||| |||||||||| | |||| | ||| | | |||||| Sbjct 18401 ATACCTTCCTTGTCCTGGATCTTCTGCTTGACATTGTCGATCGAGTCTGAAGGCTCGACG 18342 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || |||||||| || || || || || |||||||| Sbjct 18341 TCCAACGTAATGGTCTTGCCGGTGAGTGTCTTGACGAAGATCTGCAT 18295 >seq549 Length=149600 Score = 82.4 bits (90), Expect = 7e-11 Identities = 123/170 (72%), Gaps = 6/170 (4%) Strand=Plus/Plus Query 47412 GGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTT 47471 || |||||| ||| | | ||| | |||||||||| || ||||| || || || ||| Sbjct 88320 GGTATGAACTCGGCGCTCATGTGCCAGTACATCGAGTTCGTCGCTGATCGTCTTCTC--- 88376 Query 47472 CA-GCTAAAG-TATCCC-AAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAAC 47528 || ||| | | || | ||||| ||| || | || ||||| || | ||| | | Sbjct 88377 CACGCTCTTGGTGTCTCGAAGATCTACAACGCGTCCAACCCATTTGACTGGATGGATATG 88436 Query 47529 ATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 || |||||| |||||||||||||||| ||||||||||| || || ||||| Sbjct 88437 ATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGAATA 88486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475494600658320