Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq549 188 9e-43 seq797 118 1e-21 >seq549 Length=149600 Score = 188 bits (208), Expect = 9e-43 Identities = 557/851 (65%), Gaps = 12/851 (1%) Strand=Plus/Minus Query 127225 CTTGCCGTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATT 127284 |||| ||| || || || ||||||||||||||||| ||||| || | ||| ||| | Sbjct 88493 CTTGGAGTATTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCAT 88434 Query 127285 CTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAG 127344 ||||| | ||||||||||| | ||| | || | | || |||| | ||| Sbjct 88433 ATCCATCCAGTCAAATGGGTTGGACGCGTTGTAGATCTTCGAGACACCAAGAGCGTGGAG 88374 Query 127345 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG 127404 |||||||| | |||| |||| ||||||| |||| | | |||||||||||||| || Sbjct 88373 AAGACGATCAGCGACGAACTCGATGTACTGGCACATGAGCGCCGAGTTCATACCGATAAG 88314 Query 127405 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGAT 127464 | |||||||| |||| || |||| ||||||| || || || || | || || Sbjct 88313 CTCGACTGGGAGCGAGTCCTTGACGAACTCCTTCTCGATCGTGACGGCATCACTGACAAT 88254 Query 127465 GGCGTGAATAGTGTCCACCCCAGGT--CTATTGCGTAAAGTCTTGAAGAGTTCCA-CAG- 127520 |||| || | | || | || | || | | ||| |||| | | ||| Sbjct 88253 CTCGTGGAT--TCGCGACTCTGGGAGACGGTTAACAAGCTTGTTGTAGAG--CAAGCAGG 88198 Query 127521 CAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTG 127580 | || || ||||||||| || ||||| ||| || || |||||||||| || || | Sbjct 88197 CGAAGTCACAGTGGAGACCTTCATCACGACTGATAAGCTCGTTCGAGAAGCTGAGGCCAG 88138 Query 127581 GCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCC 127640 |||||||||| |||||||| | |||||| | || || || || || ||||||||||| | Sbjct 88137 GCATGAGACCACGCTTCTTGAGCCAGAAGACCGAGCAGAACGAACCCGAGAAGAAGATAC 88078 Query 127641 CCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACC 127700 |||| | ||||| || | | |||||| ||||| | | | || || ||| ||| Sbjct 88077 CCTCAATGGCAGCGAAGGCGACGACACGCTCAGCAAACGCGGCGTTCTCTGAGTCACACC 88018 Query 127701 ACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGA 127760 | | |||||| | ||||| |||| | ||||||| |||| || || || | Sbjct 88017 AGCGGAGCGCCCAGTTGGCCTTCTTCTGCACGCATGGGATTGTCTCAATGGCGCGGAACA 87958 Query 127761 GTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGC 127820 | ||||| || | | ||| ||||||||| | || || | || || |||| Sbjct 87957 AGTGGTTCTTCTCGGCGGCATCCTTGATGTACGTGTCAATCAACAGCGAGTACATTTCCG 87898 Query 127821 CGTGGACCATTTCATTATGGCA--CTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTG 127878 ||||| | ||| |||||| ||| | ||||||| |||| ||||| | ||| Sbjct 87897 AGTGGATGTTCTCA--ATGGCAATCTGGAAGCCGTAGAAGCAGCGGGCTTCAGGCACCTG 87840 Query 127879 TACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAA 127938 || || | | || || | | ||||| ||||| ||||| |||| || Sbjct 87839 GACTTCGTTGCTGAAGTTCATGGCAAGGTTCTCGTTCACAATACCATCACTGGCAGCGAA 87780 Query 127939 AAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCAGTCGTC 127998 ||||| || | | ||| ||||| | | ||||| ||| ||| | | ||||||| | Sbjct 87779 GAACGCGAGCACGTGCTTGATGAAGTGACGCTCATTGTCGGTCAAGTTGCTCCAGTCCTT 87720 Query 127999 GAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCAATTGCTCATTTGAGCCTTCTTATA 128058 ||| || | ||||| | |||||| | ||||| ||| || |||||||| || Sbjct 87719 GAGGTCGTGCACAAGATCGATCTCCTCGACCGTCCAGAAGCTGGCTTCCGCCTTCTTGTA 87660 Query 128059 GAGTTCCCAGA 128069 | ||||||| Sbjct 87659 CATATCCCAGA 87649 >seq797 Length=162424 Score = 118 bits (130), Expect = 1e-21 Identities = 260/379 (69%), Gaps = 18/379 (5%) Strand=Plus/Plus Query 175746 AACCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGA 175805 |||| || ||||||||||| | ||||| || ||||||||||| | ||| | ||| Sbjct 53271 AACCAGTACCAATACCTTCACTACCGTTGACAAGAACCATTGGGATGACTGGAACATACC 53330 Query 175806 AGTCTGGTTCAATCGCACGCCCATCATCGTCCAAATAGTTGAGCACGGGGTCATCCCTCG 175865 | || ||||| |||| | ||||||||||| | |||||||| || || |||| | Sbjct 53331 ACTCAGGTTCGATCGATTGACCATCATCGTCAAGGTAGTTGAGAACATCGTTATCCAGTG 53390 Query 175866 GATCAAAGATTTTACGAGCATCCTTGGT--GAGTTTTGTGAAGATGTACC--TCGTTTGA 175921 |||| |||| |||||| ||| ||| || ||||||||||| | | ||| Sbjct 53391 GATCGAAGAGGCATCGAGCA--AGAGGTTCGAGGTTGGTGAAGATGTAACGAGGGCTTG- 53447 Query 175922 GACGCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTG 175981 || || ||||| ||||| | ||||| || || ||||| |||| || | |||| Sbjct 53448 CAC-TGTCCTTGCCTCCCATCAATCGCGTACCGAACTGACCGTTTGGCGAGAGCAAATTG 53506 Query 175982 ATATTGTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGTATCCGCGAGGGAGACT 176041 || ||||| ||||| |||| | ||||| |||||||| ||| ||| || ||| Sbjct 53507 ATGTTGTTGCTGCCCACGAAGTCTTGCGCCATGTTGACAATTGTA-CCG---TAGATACT 53562 Query 176042 ----TCACCGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAA-CTGCGCCACCT 176096 |||||||||||||| ||||| | |||| || || || |||| || || |||| Sbjct 53563 TGCCTCACCGTGATGGTAAGCCGAATGCTCCGAGACGTA-TCCTCCAAGTTGGGCGACCT 53621 Query 176097 TCATCTCATCCTTGAGGTT 176115 | || || ||| ||||| Sbjct 53622 TGATTTCCGTCTTCAGGTT 53640 Score = 93.3 bits (102), Expect = 5e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 177708 TCACGATGGAAAACTCCGAGGAGTAGATGTTCGTCAACTTGGCACCGTAGCCATTGCGTC 177767 || ||| || || |||| |||| |||| || ||||||||||||||||| || || || | Sbjct 55410 TCTCGACGGTGAATTCCGTGGAGAAGATATTGGTCAACTTGGCACCGTAACCGTTTCGAC 55469 Query 177768 CACCAACAATTCTCTTCTTGTTGTCATCGTAGTTTGTACTCGTGAGAAGGTGACCAAAGG 177827 |||| ||| | |||| |||| ||| ||| |||| | | || | |||||||||||| Sbjct 55470 CACCGACAGTCTTCTTTTTGTCGTCGTCGAAGTTACTTCCGGTCAAGAGGTGACCAAAGA 55529 Query 177828 TAAGTTCTGGA 177838 | ||||| ||| Sbjct 55530 TGAGTTCCGGA 55540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613499201399880