Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq549 129 9e-25 >seq549 Length=149600 Score = 129 bits (142), Expect = 9e-25 Identities = 408/621 (66%), Gaps = 15/621 (2%) Strand=Plus/Minus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| |||||||||||||||| | || || ||||| | | |||||||| Sbjct 88472 CTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATATCCATCCAGTCAAATGGGTT 88413 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 | ||| ||| ||||| | || ||||| || | | || || || || || Sbjct 88412 GGACGCGTTGTAGATCTTCGAGACACCAAGAGCGTGGAGAAGACGATCAGCGACGAACTC 88353 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| ||||| || | |||| || || | ||| || ||||||| ||| Sbjct 88352 GATGTACTGGCACATGAGCGCCGAGTTCATACCGATAAGCTCGACTGGGAGCGAGTCCTT 88293 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTACCC 159888 | ||||||||||| ||| ||| || || | ||||||| || || || || | Sbjct 88292 GACGAACTCCTTCTCGATCGTGACGGCATCACTGACAATCTCGTGGATTCG--CG-ACTC 88236 Query 159889 CGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTC 159948 || | || | | || | || | ||| || ||||| ||||| || || || Sbjct 88235 TGGGAGACGGTTAACAAGCTTGTTGTAGAGCAAGCAGGCGAAGTCACAGTGGAGACCTTC 88176 Query 159949 GTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGAG 160008 || ||| ||| | |||||| || | | ||||||| ||||||| |||||| ||||| Sbjct 88175 ATCACGACTGATAAGCTCGTTCGAGAAGCTGAGGCCAGGCATGAGACCACGCTTCTTGAG 88116 Query 160009 CCAAAAAATGGCCGCAAAAGCACCGCTAAAA-AAGATCCCCTCCACGGCCGCAAACGCCA 160067 ||| || | | ||| || | | | | || ||||| ||||| | ||| || || || | Sbjct 88115 CCAGAAGACCGA-GCAGAACGAACCCGAGAAGAAGATACCCTCAATGGCAGCGAAGGCGA 88057 Query 160068 CGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTC-CACCTTTTG---GCCCATTCA 160123 ||| | |||| |||| | |||||| || || ||| |||| | ||||| | Sbjct 88056 CGACACGCTCAGCAAACGCGGCGTTC---TC-TGAGTCACACCAGCGGAGCGCCCAGTTG 88001 Query 160124 GCCTTCTT-TGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTT 160182 |||||||| ||| | ||| || || ||| | |||| ||||| || || ||| Sbjct 88000 GCCTTCTTCTGC-ACGCATGGGATTGTCTCAATGGCGCGGAACAAGTGGTTCTTCTCGGC 87942 Query 160183 CACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGAT 160242 |||||||||| || |||||| | |||||||||||| | ||| | || || || Sbjct 87941 GGCATCCTTGATGTACGTGTCAATCAACAGCGAGTACATTTCCGAGTGGATGTTCTCAAT 87882 Query 160243 GGCCATCTGAAAGTTGTAGAA 160263 ||| ||||| ||| |||||| Sbjct 87881 GGCAATCTGGAAGCCGTAGAA 87861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795144833164080