Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1035 158 1e-33 seq148 138 1e-27 seq135 96.9 4e-15 seq50 93.3 5e-14 >seq1035 Length=208423 Score = 158 bits (174), Expect = 1e-33 Identities = 171/223 (77%), Gaps = 8/223 (4%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||||| ||||| || |||||| ||||| |||||||| || || ||||| | Sbjct 98359 ACGGAGCACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCC 98418 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || |||||||||||||||||||| |||| ||||||||||| | || | | ||||| Sbjct 98419 ATCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGAATTCCTTCCTT 98478 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCG-TGTCGCTCGAT---TCCACATCCACCG 46553 |||| |||||||| ||||| ||| | || | |||| |||| || ||||| | || Sbjct 98479 GTCCTGGATCTTCTGCTTGA-CGTTGTCAATGCTGTC---CGATGGCTCGACATCGAGCG 98534 Query 46554 TGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 ||||||| ||||||||||| || || |||||||| ||||| || Sbjct 98535 TGATGGTCTTGCCCGTCAGAGTCTTCACAAAGATCTGCATCTT 98577 >seq148 Length=18536 Score = 138 bits (152), Expect = 1e-27 Identities = 161/215 (75%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||| ||||| ||| |||||| ||||| |||||||| || || || || |||| || Sbjct 111 CACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGGCCGTCCTC 170 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 |||||||||||| ||||| ||||| |||||||| || | || | || ||||||||| Sbjct 171 GAGCTGCTTGCCAGCGAAAATCAATCGCTGCTGATCTGGAGGAATGCCTTCCTTGTCCTG 230 Query 46504 GATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTT 46562 |||||||| ||||| ||| | | | || ||| | || || || | || ||||| | Sbjct 231 GATCTTCTGCTTGA-CGTTGTCGATCGAGTCCGAAGGCTCGACGTCGAGAGTAATGGTCT 289 Query 46563 TGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 |||| |||| ||| || || ||||| ||||| ||| Sbjct 290 TGCCGGTCAACGTCTTCACGAAGATCTGCATCTTG 324 Score = 125 bits (138), Expect = 8e-24 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 46376 AAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGC 46435 || || | ||||| ||||| ||| |||||| ||||| |||||||| || || || || Sbjct 18512 AAGCGGAGCACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGG 18453 Query 46436 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCC 46495 |||| ||||||||||| || || || ||||| |||||||| || | || | | ||| Sbjct 18452 CCGTCCTCGAGCTGCTTACCAGCAAAGATCAAACGCTGCTGATCTGGAGGAATACCTTCC 18393 Query 46496 TTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTG 46555 |||||| |||||||| ||||| | | | || ||| | || || |||| ||| Sbjct 18392 TTGTCCTGGATCTTCTGCTTGACATTGTCGATCGAGTCTGAAGGCTCGACGTCCAACGTA 18333 Query 46556 ATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 ||||| ||||| || || || || || ||||| ||||| ||| Sbjct 18332 ATGGTCTTGCCGGTGAGTGTCTTGACGAAGATCTGCATCTTG 18291 >seq135 Length=10251 Score = 96.9 bits (106), Expect = 4e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||||| ||||| ||| |||||| ||||| |||||||| || || || || || Sbjct 10148 CGCAGCACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGGCCG 10207 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 || |||||||||||||| ||||| ||||| |||||||| || Sbjct 10208 TCCTCGAGCTGCTTGCCAGCGAAAATCAATCGCTGCTGATC 10248 >seq50 Length=3935 Score = 93.3 bits (102), Expect = 5e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||| ||||| ||| |||||| ||||| |||||||| || || || || |||| || Sbjct 99 CACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGGCCGTCCTC 40 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 |||||||||||| ||||| ||||| |||||||| || Sbjct 39 GAGCTGCTTGCCAGCGAAAATCAATCGCTGCTGATC 4 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565231030704360