Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq549 239 5e-58 seq1035 140 3e-28 seq148 118 1e-21 seq135 84.2 2e-11 >seq549 Length=149600 Score = 239 bits (264), Expect = 5e-58 Identities = 439/634 (69%), Gaps = 12/634 (2%) Strand=Plus/Minus Query 132883 TTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTG 132942 ||| | | |||||| || ||||| || || | || || || | || || ||||| Sbjct 88213 TTGTAGAGCAAGCAGGCGAAGTCACAGTGGAGACCTTCATCACGACTGATAAGCTCGTTC 88154 Query 132943 CTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTG 133002 ||| | | ||| |||||||| || || || |||||||| || | | | ||| Sbjct 88153 GAGAAGCTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGACCGAGCAGAACGAA 88094 Query 133003 CCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGC- 133061 ||||| ||||||| ||||| | ||| ||||| || || | ||||| | |||| ||| Sbjct 88093 CCCGAGAAGAAGATACCCTCAATGGCAGCGAAGGCGACGACACGCTCAGCAAACGCGGCG 88034 Query 133062 TTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGT 133121 |||| || | | |||||| |||||||| | |||||| | | ||||| || || || Sbjct 88033 TTCTCTGA-GTCACACCAGCGGAGCGCCCAGTTGGCCTTCTTCTGCACGCATGGGATTGT 87975 Query 133122 TTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC---ACGTAGGTGTCGAT 133178 || |||||| ||||| || |||| || | || | | | ||| ||||| || Sbjct 87974 CTCAATGGCGCGGAACAAGTGG---TTCTTCTCGGCGGCATCCTTGATGTACGTGTCAAT 87918 Query 133179 GAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCA 133238 | ||| |||||||||||||| | |||||| ||||| || || |||||||| ||||| Sbjct 87917 CAACAGCGAGTACATTTCCGAGTGGATGTTCTCAATGGCAATCTGGAAGCCGTAGAAGCA 87858 Query 133239 CCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGAT 133298 || || || |||||| ||||| | ||| | | | || || ||||| || || Sbjct 87857 GCGGGCTTCAGGCACCTGGACTTCGTTGCTGAAGTTCATGGCAAGGTTCTCGTTCACAAT 87798 Query 133299 GCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTT 133358 || || ||||| ||||| || || ||||||||||||||||| || ||||| |||||| | Sbjct 87797 ACCATCACTGGCAGCGAAGAACGCGAGCACGTGCTTGATGAAGTGACGCTCATTGTCGGT 87738 Query 133359 CAAG-CGCTCCCAGTCGCGCGTGTCCTTGGAC-AGGTCCACCTCCTCGACGGTCCAAAAC 133416 |||| ||| |||||| | | | | || || || || | ||||||||| ||||| || Sbjct 87737 CAAGTTGCT-CCAGTC-CTTGAGGTCGTGCACAAGATCGATCTCCTCGACCGTCCAGAAG 87680 Query 133417 GACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACA 133476 || || || || ||||||||| ||| || ||| | || || || || | ||| Sbjct 87679 CTGGCTTCCGCCTTCTTGTACATATCCCAGATCTCCTTCTCCTGGATCGGGAAGAGCACG 87620 Query 133477 AACCGGCGGGGGTTTTCGCGCAACAGCGGCTCCG 133510 || ||| ||||| ||||| | ||| ||||||| Sbjct 87619 AATCGGTTTGGGTTCTCGCGAAGCAGAGGCTCCG 87586 >seq1035 Length=208423 Score = 140 bits (154), Expect = 3e-28 Identities = 165/221 (75%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 38240 aaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| ||||| || || || || || || |||||||| |||||||| |||| |||||| | Sbjct 98578 AAAGATGCAGATCTTTGTGAAGACTCTGACGGGCAAGACCATCACGCTCGATGTCGAGCC 98519 Query 38300 CACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358 | |||||| | | |||| | || | || |||| ||||| || |||||||| | | Sbjct 98518 ATCGGACAGCATTGACAACG-TCAAGCAGAAGATCCAGGACAAGGAAGGAATTCCACCAG 98460 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 |||| ||||| || || | ||| ||||| ||||| || || | ||||| ||| |||| Sbjct 98459 ACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTCTCGGACT 98400 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||| ||||| |||| |||| |||||||| ||| Sbjct 98399 ACAACATCCAGAAGGAGTCGACCTTGCACTTGGTGCTCCGT 98359 >seq148 Length=18536 Score = 118 bits (130), Expect = 1e-21 Identities = 161/222 (73%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 38238 aaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAG 38297 || || ||||| || ||||| || ||| | || ||||| ||||| || ||||||||||| Sbjct 326 AACAAGATGCAGATCTTCGTGAAGACGTTGACCGGCAAGACCATTACTCTCGACGTCGAG 267 Query 38298 GCCACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGC 38356 | | ||| | | |||| | || | || |||| ||||| || || ||||| | Sbjct 266 CCTTCGGACTCGATCGACAACG-TCAAGCAGAAGATCCAGGACAAGGAAGGCATTCCTCC 208 Query 38357 CGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGA 38416 || || ||||| | |||| ||| ||||| ||||| || |||| || |||||| || Sbjct 207 AGATCAGCAGCGATTGATTTTCGCTGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCGGA 148 Query 38417 CTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||||||||| ||||| | ||| |||| |||||||| || Sbjct 147 CTACAACATCCAGAAGGAGTCTACGTTGCACTTGGTGCTCCG 106 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38241 aaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || ||||| ||||| ||||| || | ||||||||| | Sbjct 18292 AAGATGCAGATCTTCGTCAAGACACTCACCGGCAAGACCATTACGTTGGACGTCGAGCCT 18351 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | ||| | | | | || | || |||| ||||| || || ||||| | || Sbjct 18352 TCAGACTCGATCGACAATGTCAAGCAGAAGATCCAGGACAAGGAAGGTATTCCTCCAGAT 18411 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| | || | || || || ||||| || |||| || |||||| |||||| Sbjct 18412 CAGCAGCGTTTGATCTTTGCTGGTAAGCAGCTCGAGGACGGCCGTACCCTCTCGGACTAC 18471 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| ||||| | ||| |||| |||||||| || ||| | || || Sbjct 18472 AACATCCAGAAGGAGTCTACGTTGCACTTGGTGCTCCGCTTGCGTGGTGG 18521 >seq135 Length=10251 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 38358 GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 38417 || || ||||| | |||| ||| ||||| ||||| || |||| || |||||| ||| Sbjct 10248 GATCAGCAGCGATTGATTTTCGCTGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCGGAC 10189 Query 38418 TACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||||| ||||| | ||| |||| ||||||||||| Sbjct 10188 TACAACATCCAGAAGGAGTCTACGTTGCACTTGGTGCTGCG 10148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500166278997120