Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq549 158 2e-33 seq806 91.5 2e-13 >seq549 Length=149600 Score = 158 bits (174), Expect = 2e-33 Identities = 199/271 (73%), Gaps = 2/271 (1%) Strand=Plus/Plus Query 102051 ATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACA 102110 || |||| ||| || ||||||| || |||||||| || | || ||||| | ||| Sbjct 87918 ATTGACACGTACATCAAGGATGCCGCCGAGAAGAACCACTTGTTCCGCGCCATTGAGACA 87977 Query 102111 GTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGT-CGCG 102169 | ||||| | || ||||| || | ||||| | |||| ||| || || ||| Sbjct 87978 ATCCCATGCGTGCAGAAGAAGGCCAACTGGGCGCTCCGCTGGTGTGACTCAGAGAACGCC 88037 Query 102170 TTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTC 102229 | ||||||||||| || |||| || || ||||||||||||||||||| ||||| Sbjct 88038 G-CGTTTGCTGAGCGTGTCGTCGCCTTCGCTGCCATTGAGGGTATCTTCTTCTCGGGTTC 88096 Query 102230 CTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAA 102289 |||||| | | | |||||||||||||| ||||||||||| || ||| ||||||| || Sbjct 88097 GTTCTGCTCGGTCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGCCTCAGCTTCTCGAA 88156 Query 102290 CGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 |||||||||| |||||| || || |||||| Sbjct 88157 CGAGCTTATCAGTCGTGATGAAGGTCTCCAC 88187 >seq806 Length=732016 Score = 91.5 bits (100), Expect = 2e-13 Identities = 283/427 (66%), Gaps = 16/427 (4%) Strand=Plus/Minus Query 175841 CCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGAAG 175900 || |||||||| ||||||| ||||||| || | |||||| | |||| | |||| || Sbjct 455313 CCAGTACCGATGCCCTCTGAGCCGTTCAACAGCAGCATGGGCAAGATTGGTACGTAGTAG 455254 Query 175901 TCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATC----TCT 175956 | ||||| | ||| ||||||||| || | ||| | || | | || || ||| Sbjct 455253 TGAGGCTCCACTGGGTAACCATCGTCGTCGACGTAGCTCAGCAACGCGTCGTCGTCTTCT 455194 Query 175957 CGGATCAAAGATCTTTCGGGCAT-CTTTTGTGAGCTTTGTAAAGATATACCTCGTTTGAG 176015 ||| || | | || | | ||| || || || ||||| || | | | Sbjct 455193 GGGAACAG----CATACGCGTGTACTTCTGCAAGAAC-GTGAAGATGTAACGAGGACTCG 455139 Query 176016 ACGCATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGA 176075 ||||||||||||||| || |||||||| || ||||| | || | || | || | Sbjct 455138 CAGCATCCTTACCACCCTGAAGTCGCGTACCGAATTGACCCGAAGGGTAGAGCA-ATGGC 455080 Query 176076 TA-TTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGA-GAGAGAC 176133 | ||||| | ||| | |||||| | ||||| || ||||| || | | || | || | Sbjct 455079 AAGTTGTTCGCACCAACGTAGTCCTGCGCCATATTCACAATTGT-TGAGTGAAGTGATGC 455021 Query 176134 TTCACCGTGGTGGTACGCACTCTTCTCTGCGACAA-ATGCCGCCAACTGCGCCACTTTCA 176192 ||||||||||||||| || | | ||| | ||| | |||| | ||||||||| || | Sbjct 455020 TTCACCGTGGTGGTATGCCGTATGCTCA-CTACAGTAACCCGCGAGCTGCGCCACCTTGA 454962 Query 176193 TCTCATCCTTGAGATTCTTGTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGA 176252 || | | |||| || | || ||| ||| ||| ||||| || || || ||||| Sbjct 454961 CTTCCTTCGTGAGTTTTCGCTTGAGACAAGCGAACAACACCTTACGCTGTGATACCTTGA 454902 Query 176253 GACCATC 176259 ||||||| Sbjct 454901 GACCATC 454895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620734307070960