Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq321 131 2e-25 seq862 118 1e-21 seq549 100 3e-16 seq797 95.1 1e-14 >seq321 Length=69230 Score = 131 bits (144), Expect = 2e-25 Identities = 285/421 (68%), Gaps = 17/421 (4%) Strand=Plus/Plus Query 11496 AATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTT 11555 ||||| ||||||||||||||| || ||||| | || | || |||||||| |||||||| Sbjct 57715 AATCTGACGATCGAAACGACCAGGACGGAGAATGGCCTTGTCGAGAATATCCACACGGTT 57774 Query 11556 TGTAGCGGCAATGACTACAATGCCAGTCTCATT---GTCGAAACCGTCCATTTCTGTGAG 11612 ||| |||||| || |||| || ||| | || |||||| |||||||| ||| Sbjct 57775 CGTACCGGCAAGCACGACAA---CACCTTCACTCGAGTTGAAACCATCCATTTCGACGAG 57831 Query 11613 AAGCTGGTTGATCGTCTGTTCACGCTCATCGTT------GGAGGGCATACCACCTGCCGA 11666 | |||||| | ||| | ||||| || ||||| ||| | | | | ||| Sbjct 57832 CAACTGGTTCAACGTGTTCTCACGTTCGTCGTTACCACCCGAGAAC-TGGCCCTTGC--T 57888 Query 11667 ACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACG 11726 |||| | | || || || || ||||||||||| ||||| || || |||||| || Sbjct 57889 ACGCGCACGAGCCACGGCATCGATTTCATCGATGAAAACGATGCAAGGCGCGTTGGCGCG 57948 Query 11727 TGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAA 11786 || | ||| || ||||| |||||| | || ||||| || |||||||||| ||| Sbjct 57949 AGCTTCACGGAAGAGATCACGCACACGCGAAGGACCGACACCGACAAACATCTCAATGAA 58008 Query 11787 GTTTGCGGCAGA-ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGA 11845 | | | || | |||||| ||| || ||| | | ||||| || | || || | Sbjct 58009 ATCCGAACCCGAGATACTGAA-GAACGGTACACTGGCTTCACCGGCCGTCGCCTTGGCCA 58067 Query 11846 GGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCAC 11905 ||| |||||||| |||||||| | ||| | || | || || || ||||| |||| Sbjct 58068 AGAGCGTCTTACCGGTACCAGGAGGACCGACAAGCAACGCACCCTTTGGAATCTTCGCAC 58127 Query 11906 C 11906 | Sbjct 58128 C 58128 >seq862 Length=8048 Score = 118 bits (130), Expect = 1e-21 Identities = 249/366 (68%), Gaps = 8/366 (2%) Strand=Plus/Minus Query 11590 TCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAG 11649 ||||| ||||||||||| || | ||||| || | ||| || || || || ||||||||| Sbjct 1566 TCGAAGCCGTCCATTTCCGTCAAGAGCTGATTCAGCGTTTGCTCGCGTTCGTCGTTGGAG 1507 Query 11650 GGCATACCACCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATA 11709 | |||||| || |||| | ||| ||||| || ||||| || || | |||| Sbjct 1506 TTGAGACCACCA--CGG--GCTT--TGGCGAGCGCGTCGATTTCATCAATAAAGATGATA 1453 Query 11710 CACGGTTGGTTGGCACGT-GCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACC 11768 ||| || ||| | || ||||| ||| || || || |||||| || || ||| Sbjct 1452 CACTGTGGGT-GCTGCGAAGCCTGCGTGAACAGATCCCGAACACGCGCTGCGCCTCGACC 1394 Query 11769 TACGAACATCTCAACGAAGTTTGCGGCAGAACACTGAATGAAGGGAACATTAGACTCACC 11828 |||| |||||||||||| | | ||||| || | ||||| |||| || ||| Sbjct 1393 AACGAGCATCTCAACGAAATCCGACGCAGAGCAGAAGAGGAAGGCAACACCAGCTTCAGA 1334 Query 11829 AGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCC 11888 ||| | ||| || || | || ||||| || ||||| | | |||| ||| | | | || Sbjct 1333 AGCAACGGCACGCGCCAACAGCGTCTTTCCGGTACCCGACGGACCACAGAGCAAGACACC 1274 Query 11889 ACGGGGGATCTTGGCACCACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAAT 11948 || | |||||||||| | | ||| ||| | || ||||||||||| ||||| | Sbjct 1273 CTTTGGCACCTTGGCACCAATAGCTTCGTATCGCGCTGGGTTCTTGAGGAAATCCACCAC 1214 Query 11949 CTCCTC 11954 ||||| Sbjct 1213 TTCCTC 1208 >seq549 Length=149600 Score = 100 bits (110), Expect = 3e-16 Identities = 371/574 (65%), Gaps = 13/574 (2%) Strand=Plus/Minus Query 119208 TAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATA 119267 || ||||| || | ||| |||||||| || ||||| || | ||| ||||| | ||||| Sbjct 88486 TATTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATATCCATC 88427 Query 119268 AAGTCAAAAGGATTTTTGGAGTTCCAGATTGGTGGTTGACCAACTTGTTTCAGAAGACGA 119327 ||||||| || || | ||| |||| | ||||| | ||||||||| Sbjct 88426 CAGTCAAATGGGTTGGACGCGTTGTAGATCTTCGAGACACCAAGAGCGTGGAGAAGACGA 88367 Query 119328 TCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTACAC 119387 || | ||| ||||||| || | | |||| |||| |||||||| || || | Sbjct 88366 TCAGCGACGAACTCGATGTACTGGCACATGAGCGCCGAGTTCATACCGATAAGCTCGACT 88307 Query 119388 GGGAGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATGGAGTGA 119447 ||||| | || || ||| | |||||||||| || || || | || || ||| Sbjct 88306 GGGAGCGAGTCCTTGACGAACTCCTTCTCGATCGTGACGGCATCACTGACAATCTCGTGG 88247 Query 119448 ATA---GTTTCTGTC-GATGGTTTGTTTCTCAAGAGT-TTAAACAACTCTACGGCAAATT 119502 || | |||| || |||| |||| | || | | | ||| || | Sbjct 88246 ATTCGCGACTCTGGGAGACGGTTAA-----CAAGCTTGTTGTAGAGCAAGCAGGCGAAGT 88192 Query 119503 CTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGA 119562 | || || |||||||| ||| ||| ||||| || ||||| || |||||||||| Sbjct 88191 CACAGTGGAGACCTTCATCACGACTGATAAGCTCGTTCGAGAAGCTGAGGCCAGGCATGA 88132 Query 119563 GTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCA 119622 | || | ||||| ||||| |||| | || || || || |||||||| ||||| | Sbjct 88131 GACCACGCTTCTTGAGCCAGAAGACCGAGCAGAACGAACCCGAGAAGAAGATACCCTCAA 88072 Query 119623 CACAGGCGAAAGCGAATAGACGCTCAGCAAAAG-GTCG-AGACT-TGTCGAACCACTTGA 119679 ||||| |||| | |||||||||||| | | || || ||| |||| || Sbjct 88071 TGGCAGCGAAGGCGACGACACGCTCAGCAAACGCGGCGTTCTCTGAGTCACACCAGCGGA 88012 Query 119680 GAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGCT 119739 | |||||||||||||| || | ||| |||| || | ||||| ||| | || | Sbjct 88011 GCGCCCAGTTGGCCTTCTTCTGCACGCATGGGATTGTCTCAATGGCGCGGAACAAGTGGT 87952 Query 119740 TCTTTTCAGCACCATCCTTAATATATTTATCAAT 119773 |||| || || ||||||| || || | ||||| Sbjct 87951 TCTTCTCGGCGGCATCCTTGATGTACGTGTCAAT 87918 >seq797 Length=162424 Score = 95.1 bits (104), Expect = 1e-14 Identities = 172/247 (70%), Gaps = 6/247 (2%) Strand=Plus/Plus Query 167357 AACCCGTACCAATACCTTCAGTACCGTTTACCAAAACCATCGGTAGAGTTGGCATGTAAA 167416 |||| ||||||||||||||| ||||||| || | |||||| || | ||| | || Sbjct 53271 AACCAGTACCAATACCTTCACTACCGTTGACAAGAACCATTGGGATGACTGGAACATACC 53330 Query 167417 AGTCGGGTTCAATGGAACGACCATCATCATCCAAGTAGTTGAGAATGGCATCATCTTTGG 167476 | || ||||| || || |||||||||| || | ||||||||||| | | ||| | Sbjct 53331 ACTCAGGTTCGATCGATTGACCATCATCGTCAAGGTAGTTGAGAACATCGTTATCCAGTG 53390 Query 167477 GATCGAAGAGCTTTCGAGCCTCCTTGGT--AAGCTTCGTAAAGATGT-ACCTCGTCTGAG 167533 |||||||||| |||||| ||| || || || ||||||| || | || Sbjct 53391 GATCGAAGAGGCATCGAGC--AAGAGGTTCGAGGTTGGTGAAGATGTAACGAGGGCTTGC 53448 Query 167534 ACGCATCCTTGCCACCCATGAGGCGTGTACCAAATTGACCACATGGCTCGAGAAGATTGA 167593 || |||||||| ||||| | || ||||| || ||||| |||| ||| | ||||| Sbjct 53449 AC-TGTCCTTGCCTCCCATCAATCGCGTACCGAACTGACCGTTTGGCGAGAGCAAATTGA 53507 Query 167594 TGTTATT 167600 |||| || Sbjct 53508 TGTTGTT 53514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588968321225400