Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq549 181 1e-40 seq806 93.3 5e-14 >seq549 Length=149600 Score = 181 bits (200), Expect = 1e-40 Identities = 388/576 (67%), Gaps = 8/576 (1%) Strand=Plus/Minus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || ||||| |||||||| |||||||||||||| || | || || | ||||| Sbjct 88486 TATTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATATCCATC 88427 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGACGA 117105 |||||||||| || |||||| | || | || |||| | ||| |||||| Sbjct 88426 CAGTCAAATGGGTTGGACGCGTTGTAGATCTTCGAGACACCAAGAGCGTGGAGAAGACGA 88367 Query 117106 TCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACAT 117165 || | || |||| ||||||| | |||| | | |||||||||||||| || | | Sbjct 88366 TCAGCGACGAACTCGATGTACTGGCACATGAGCGCCGAGTTCATACCGATAAGCTCGACT 88307 Query 117166 GGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGG 117225 ||||| | |||| || |||| | ||||| ||| || || || | || || ||||| Sbjct 88306 GGGAGCGAGTCCTTGACGAACTCCTTCTCGATCGTGACGGCATCACTGACAATCTCGTGG 88247 Query 117226 ATA---GTTTC-GGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAACTC 117281 || | || || || ||| || | || | ||| ||||| ||| || || Sbjct 88246 ATTCGCGACTCTGGGAGACGGT-TAACAAGCT---TGTTGTAGAGCAAGCAGGCGAAGTC 88191 Query 117282 CTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAG 117341 ||||||||| ||||| || ||||| || || ||||||| ||||| |||||||| Sbjct 88190 ACAGTGGAGACCTTCATCACGACTGATAAGCTCGTTCGAGAAGCTGAGGCCAGGCATGAG 88131 Query 117342 ACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCAC 117401 ||| |||||||| | ||| | | | |||||| || || ||||||||||||||||| | Sbjct 88130 ACCACGCTTCTTGAGCCAGAAGACCGAGCAGAACGAACCCGAGAAGAAGATACCCTCAAT 88071 Query 117402 ACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAACCATTTCAT 117461 || || || | | ||||| || || | | || || |||| |||| | Sbjct 88070 GGCAGCGAAGGCGACGACACGCTCAGCAAACGCGGCGTTCTCTGAGTCACACCAGCGGAG 88011 Query 117462 TGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTT 117521 ||||| || |||||||||| | ||||| | || | ||||| || || || || Sbjct 88010 CGCCCAGTTGGCCTTCTTCTGCACGCATGGGATTGTCTCAATGGCGCGGAACAAGTGGTT 87951 Query 117522 CTTTTCAGATCCATCCTTAATGTATTTGTCAATCAA 117557 ||| || | ||||||| ||||| |||||||||| Sbjct 87950 CTTCTCGGCGGCATCCTTGATGTACGTGTCAATCAA 87915 >seq806 Length=732016 Score = 93.3 bits (102), Expect = 5e-14 Identities = 173/246 (70%), Gaps = 6/246 (2%) Strand=Plus/Minus Query 168467 AGCATCCTTACCACCCATGAGACGCGTACCAAATTGACCACACGGTTCAAG-AAGGTTAA 168525 |||||||||||||||| || |||||||| |||||||| | || | || || | || Sbjct 455137 AGCATCCTTACCACCCTGAAGTCGCGTACCGAATTGACCCGAAGGGTAGAGCAATGGCAA 455078 Query 168526 TGTTGTTTGAACCCGTGTAGTCGTTTGCCAACTTAACAATCGTGTCCGCTAAG-GATACT 168584 |||||| | ||| |||||| | |||| || ||||| || | | ||| ||| || Sbjct 455077 -GTTGTTCGCACCAACGTAGTCCTGCGCCATATTCACAATTGT-TGAGTGAAGTGATGCT 455020 Query 168585 TCACCATGGTGGTACGCAGACTTGTCCGCGACA-TATGCCGCCAGTTGTGCCACCTTCAT 168643 ||||| |||||||| || | || | | ||| || |||| || || |||||||| | Sbjct 455019 TCACCGTGGTGGTATGCCG-TATGCTCACTACAGTAACCCGCGAGCTGCGCCACCTTGAC 454961 Query 168644 TTCATCCTTGAGATTCTTATGGAAGCAAGCATACATCACTTTCCTCTGTGAAGGCTTGAG 168703 ||| | | |||| || | || ||||| ||| ||| || | |||||| |||||| Sbjct 454960 TTCCTTCGTGAGTTTTCGCTTGAGACAAGCGAACAACACCTTACGCTGTGATACCTTGAG 454901 Query 168704 ACCATC 168709 |||||| Sbjct 454900 ACCATC 454895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589973108125320