Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1035 125 5e-24 seq148 105 4e-18 >seq1035 Length=208423 Score = 125 bits (138), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 12/218 (6%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || ||||| ||||| |||||||| || | || |||| || Sbjct 98366 ACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCATCCTCG 98425 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || ||||| || || || || ||||||||| | || | || |||||||| Sbjct 98426 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGAATTCCTTCCTTGTCCTGG 98485 Query 34893 ATCTTCTGTTTGACGG-----ATGCTATC-GATTCACCGGCCTCAACATCGACGGTTATG 34946 |||||||| |||||| ||||| || ||| | ||| ||||||| || ||| Sbjct 98486 ATCTTCTGCTTGACGTTGTCAATGCTGTCCGAT------GGCTCGACATCGAGCGTGATG 98539 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || || ||||| ||||||||||||||||||||||| || Sbjct 98540 GTCTTGCCCGTCAGAGTCTTCACAAAGATCTGCATCTT 98577 >seq148 Length=18536 Score = 105 bits (116), Expect = 4e-18 Identities = 158/223 (71%), Gaps = 1/223 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || ||||| ||||| |||||||| ||| | || | || || Sbjct 112 ACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGGCCGTCCTCG 171 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || || || || | ||| ||||| ||| | || | || |||||||| Sbjct 172 AGCTGCTTGCCAGCGAAAATCAATCGCTGCTGATCTGGAGGAATGCCTTCCTTGTCCTGG 231 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||||| |||||| | ||||| || | ||| || |||| || ||||| || Sbjct 232 ATCTTCTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCGACGTCGAGAGTAATGGTCTTG 291 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATATTCGTAGACTTGT 34995 || || | |||||||| ||||||||||| || || | ||||| Sbjct 292 CCGGTCAACGTCTTCACGAAGATCTGCATCTT-GTTGTCTTGT 333 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || ||||| ||||| |||||||| ||| | || | || || Sbjct 18503 ACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGGCCGTCCTCG 18444 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || | || ||||| ||| | || | || |||||||| Sbjct 18443 AGCTGCTTACCAGCAAAGATCAAACGCTGCTGATCTGGAGGAATACCTTCCTTGTCCTGG 18384 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||||| ||||| | ||||| || | ||| || || | || ||||| || Sbjct 18383 ATCTTCTGCTTGACATTGTCGATCGAGTCTGAAGGCTCGACGTCCAACGTAATGGTCTTG 18324 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || ||||| ||||| || ||||||||||| || Sbjct 18323 CCGGTGAGTGTCTTGACGAAGATCTGCATCTT 18292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324629473399704