Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq549 248 2e-60 >seq549 Length=149600 Score = 248 bits (274), Expect = 2e-60 Identities = 577/859 (67%), Gaps = 27/859 (3%) Strand=Plus/Minus Query 47842 GTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCAT 47901 ||| || || || | ||||| |||||||| ||||| |||| | |||||| | ||||| Sbjct 88487 GTATTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATATCCAT 88428 Query 47902 GAAGAGGAAGGGGTTGGGTGTGTTATACACC--CGTGTCAGGCCCATCTGTTCCAGCAGG 47959 || || ||||||| | ||| || | | || | || || | | || || Sbjct 88427 CCAGTCAAATGGGTTGGACGCGTTGTAGATCTTCGAGACA--CCAAGAGCGTGGAGAAGA 88370 Query 47960 TGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG--G 48017 |||| |||||| |||||||||| | ||||||| | |||||| || || || | Sbjct 88369 CGATCAGCGACGAACTCGATGTACTGGCACATGAGCGCCGAGTTCATACCGATAAGCTCG 88310 Query 48018 ACACGG-GCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 || || || | |||| || ||||||||||| ||| ||||| || | |||||| Sbjct 88309 ACTGGGAGCGAGTCCTT---GACGAACTCCTTCTCGATCGTGACGGCATCACTGACAATC 88253 Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCA 48136 | | | || ||||||| | | ||| || | ||| ||||||| |||||| Sbjct 88252 TCGTGGATTCGCGACTCTGGGAGACGGTTAACAAGCTTGTTG---TAGAGCAAGCAGGCG 88196 Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196 ||||| | ||| | ||||| || || ||||| ||| |||| ||||||| ||| |||||| Sbjct 88195 AAGTCACAGTGGAGACCTTCATCACGACTGATAAGCTCGTTCGAGAAGCTGAGGCCAGGC 88136 Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCC 48256 |||| || | || ||||||||||| | | ||| || || ||||||||||| ||| Sbjct 88135 ATGAGACCACGCTTCTTGAGCCAGAAGACCGAGCAGAACGAACCCGAGAAGAAGATACCC 88076 Query 48257 TCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCT-TGTCTGAGATCCA 48315 || | || ||||| ||| || | ||| | || | ||||||| || | | | ||| Sbjct 88075 TCAATGGCAGCGAAGGCGACGACACGCTCAGCAAACGCGGCGTTCTCTGAGTCACA-CCA 88017 Query 48316 GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGG---AA 48372 | |||||||||| |||||||||| | |||||| || ||||| ||||| ||| || Sbjct 88016 GCGGAGCGCCCAGTTGGCCTTCTTCTGCACGCATGGGATTGTCTCAATGGCGCGGAACAA 87957 Query 48373 GAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACAT 48429 | | ||||| ||| | || ||| | || || | | | |||| | |||||| Sbjct 87956 GTGGTTCTT---CTCGGCGGCATCCTTGATGTACGTGTCAATCAACAGC---GAGTACAT 87903 Query 48430 CTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACAC 48489 || ||||| | ||||| || || |||||||| ||||||||| | ||| ||| ||| Sbjct 87902 TTCCGAGTGGATGTTCTCAATGGCAATCTGGAAGCCGTAGAAGCAGCGGGCTTCAGGCAC 87843 Query 48490 CTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGC 48549 ||| ||||| || ||| || || ||||| || || || ||||| ||||| Sbjct 87842 CTGGACTTCGTTGCTGAAGTTCATGGCAAGGTTCTCGTTCACAATACCATCACTGGCAGC 87783 Query 48550 AAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCC 48609 ||||| || || || || || | ||| || ||||| |||| ||| | ||||| | Sbjct 87782 GAAGAACGCGAGCACGTGCTTGATGAAGTGACGCTCATTGTCGGTCAAGTTGCTCCAGTC 87723 Query 48610 CTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTT 48669 || | ||| | | || || | || || || ||||||||| || || || || Sbjct 87722 CTTGAGGTCGTGCACAAGATCGATCTCCTCGACCGTCCAGAAGCTGGCTTCCGCCTTCTT 87663 Query 48670 GTACATGCCCCATATGTCC 48688 |||||| |||| || ||| Sbjct 87662 GTACATATCCCAGATCTCC 87644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931520655141120