Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq549 181 1e-40 seq806 93.3 5e-14 >seq549 Length=149600 Score = 181 bits (200), Expect = 1e-40 Identities = 388/576 (67%), Gaps = 8/576 (1%) Strand=Plus/Plus Query 64945 TTGATTGACAAATACATTAAGGATGGATCTGAAAAGAAGCAGTTATTTGAAGCCATCCAA 65004 |||||||||| ||||| ||||||| | || ||||| || || || ||||| | Sbjct 87915 TTGATTGACACGTACATCAAGGATGCCGCCGAGAAGAACCACTTGTTCCGCGCCATTGAG 87974 Query 65005 ACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCT 65064 || | ||||| | |||||||||| || ||||| | |||| |||| || || Sbjct 87975 ACAATCCCATGCGTGCAGAAGAAGGCCAACTGGGCGCTCCGCTGGTGTGACTCAGAGAAC 88034 Query 65065 CGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGG 65124 | | || || ||||| | | || || || | ||||||||||||||||| || Sbjct 88035 GCCGCGTTTGCTGAGCGTGTCGTCGCCTTCGCTGCCATTGAGGGTATCTTCTTCTCGGGT 88094 Query 65125 TCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCA 65184 || |||||| | | | ||| | |||||||| ||||||||||| ||||| ||||||| Sbjct 88095 TCGTTCTGCTCGGTCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGCCTCAGCTTCTCG 88154 Query 65185 AATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAG 65244 || || ||||| || ||||| ||||||||| || || ||| ||||| ||| Sbjct 88155 AACGAGCTTATCAGTCGTGATGAAGGTCTCCACTGTGACTTCGCCTGCTTGCTCTACAAC 88214 Query 65245 ACTTTGCGTAATAGACCCACTACC-GAAAC---TATCCACGCCATCGTGAAAGAGGCGGT 65300 | || | || ||| || || || | ||||||| || || | || || || Sbjct 88215 A---AGCTTGTTA-ACCGTCTCCCAGAGTCGCGAATCCACGAGATTGTCAGTGATGCCGT 88270 Query 65301 TGAGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTC 65360 ||| ||||| | |||| || |||| | |||||| | || |||||||||||||| Sbjct 88271 CACGATCGAGAAGGAGTTCGTCAAGGACTCGCTCCCAGTCGAGCTTATCGGTATGAACTC 88330 Query 65361 TGAGAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGT 65420 | | |||| | ||||||| |||| || | |||||||| ||| | |||| || Sbjct 88331 GGCGCTCATGTGCCAGTACATCGAGTTCGTCGCTGATCGTCTTCTCCACGCTCTTGGTGT 88390 Query 65421 GCCACCCATTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGG 65480 | || | |||||| || |||||||||| ||||| | || || | || Sbjct 88391 CTCGAAGATCTACAACGCGTCCAACCCATTTGACTGGATGGATATGATCTCGCTCCAGGG 88450 Query 65481 GAAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516 |||||||||||||| |||||||| ||||| || || Sbjct 88451 CAAGACCAACTTCTTCGAGAAGCGTGTTGGTGAATA 88486 >seq806 Length=732016 Score = 93.3 bits (102), Expect = 5e-14 Identities = 173/246 (70%), Gaps = 6/246 (2%) Strand=Plus/Plus Query 14363 GATGGTCTCAAGCCTTCACAGAGGAAAGTGATGTATGCTTGCTTCCATAAGAATCTCAAG 14422 |||||||||||| |||||| | || ||| ||| ||||| || | || |||| | Sbjct 454895 GATGGTCTCAAGGTATCACAGCGTAAGGTGTTGTTCGCTTGTCTCAAGCGAAAACTCACG 454954 Query 14423 GATGAAATGAAGGTGGCACAACTGGCGGCATA-TGTCGCGGACAAGTCTGCGTACCACCA 14481 | ||| | |||||||| || || |||| || ||| | | || | || |||||||| Sbjct 454955 AAGGAAGTCAAGGTGGCGCAGCTCGCGGGTTACTGTAGTGAGCATA-CGGCATACCACCA 455013 Query 14482 TGGTGAAGTATC-CTTAGCGGACACGATTGTTAAGTTGGCAAACGACTACACGGGTTCAA 14540 ||||||| ||| ||| | | || ||||| || |||| | |||||| ||| | | Sbjct 455014 CGGTGAAGCATCACTTCACTCA-ACAATTGTGAATATGGCGCAGGACTACGTTGGTGCGA 455072 Query 14541 ACAACATTAACCTT-CTTGAACCGTGTGGTCAATTTGGTACGCGTCTCATGGGTGGTAAG 14599 ||||| || | || || | || | |||||||| |||||||| || |||||||||| Sbjct 455073 ACAAC-TTGCCATTGCTCTACCCTTCGGGTCAATTCGGTACGCGACTTCAGGGTGGTAAG 455131 Query 14600 GATGCT 14605 |||||| Sbjct 455132 GATGCT 455137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596561822223840