Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq806 123 7e-23 seq850 114 4e-20 seq561 96.9 1e-14 seq797 89.7 2e-12 >seq806 Length=732016 Score = 123 bits (136), Expect = 7e-23 Identities = 207/296 (70%), Gaps = 10/296 (3%) Strand=Plus/Plus Query 302553 ATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGT 302612 |||||||| | |||| | ||||| ||| | || ||||||||||| |||||||| Sbjct 80671 ATCATAACGAGTCATGACCGACTCCATGGCCTTCACCAACCGACGCTGAATGTAACCAGT 80730 Query 302613 TGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAA 302672 | | ||| || || |||||||| || | ||| |||||||||||||||| |||||||| Sbjct 80731 TTCGGCTGTCTTGACGGCTGTATCGATCAAACCTTCACGACCACCCATAGCGTGGAAGAA 80790 Query 302673 TAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG 302732 | || | ||| ||| ||| | | ||| | || |||||||| || || || Sbjct 80791 GAATTCCTGAGGTGTTAGACCCTTCAAGTACGAGTTTTCGACGAAACCTCGACTTTCAGG 80850 Query 302733 ---CGAATCGTCGAACTTG--GTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGG 302787 | |||| || |||| |||| |||||||| || | | | ||||| || Sbjct 80851 ACCCAAATCATC---CTTGCCGTAA--TGTGGCAGTGTTCGACGGTTGAAACCGTACGGA 80905 Query 302788 ATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 |||||||| || || || |||||||| |||| |||| ||| ||||||||||| || Sbjct 80906 ATACGCTTGCCTTCGACATTCTGCTGACCCACACACGCAATAATCTGCGAAATGTT 80961 >seq850 Length=127777 Score = 114 bits (126), Expect = 4e-20 Identities = 174/248 (70%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 251413 CCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTG 251472 ||||| | | ||| || || || | ||| ||||| || | | | || ||| || || Sbjct 96649 CCACAGATGTCACAGACGTGCACACGGTAGGCATCCGAGTTGGCGAACAGTCGATCCATG 96590 Query 251473 GTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGA 251532 |||| | | |||||| ||||||| |||||||||||||| ||||| | ||| | | Sbjct 96589 AGGAAGTTCGCCGAACCGTGAGAAATCAAGCAATCACGCTCCATCTCACCCATACGCAAA 96530 Query 251533 CCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATG 251592 ||||| || ||||| | ||| || ||||||||| || || | || ||||| Sbjct 96529 CCACCTTCACGAGCACGACCTTCCATAGGCTGACGGGTAAGCATCGTCACTGGACCACGC 96470 Query 251593 GAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCG 251652 || || || ||| |||| ||||||||||| | |||||||||||| | |||||| Sbjct 96469 GAACGCGAGTGGATCTTGTCATCGACCATATGCTTCAAACGCTGGTAGAAAGTAGGACCG 96410 Query 251653 ATGAAGAT 251660 |||||||| Sbjct 96409 ATGAAGAT 96402 >seq561 Length=342854 Score = 96.9 bits (106), Expect = 1e-14 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 354007 ATTGCTGTGGCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTCAAGG 354066 || || ||||| ||||| || |||||||||||||| | | | ||||||||||| || || Sbjct 172829 ATGGCAGTGGCAAGAGCTCCGAGCGAGTCACGGTCCAAGTAGTTAGTAGGTTCATCGAGC 172770 Query 354067 ATAAGAACGTGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTGTCCG 354126 | ||||| ||| || | | |||||| || ||| ||| || ||||| |||||||| || Sbjct 172769 ACAAGAATGTGAGGGTTGAGCCACATGGCGGCACCCAACACAACCTTCACCTTCTGACCA 172710 Query 354127 CCTGATAG 354134 || || || Sbjct 172709 CCCGAAAG 172702 >seq797 Length=162424 Score = 89.7 bits (98), Expect = 2e-12 Identities = 126/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 60169 GTCCTTGCCACCCATAAGACGGGTTCCAAATTGTCCGTTTGGCTGGAATAGATTAATGTT 60228 ||||||||| ||||| | || || || || || ||||||||| || | ||| ||||| Sbjct 53452 GTCCTTGCCTCCCATCAATCGCGTACCGAACTGACCGTTTGGCGAGAGCAAATTGATGTT 53511 Query 60229 GTTAGAGCCTACGAAATTTTGAGCGAGACCAACAATAGCACCATTTAAACTGGCTTCACC 60288 ||| ||| ||||| | ||| || | ||||| | ||| | | ||| || ||||| Sbjct 53512 GTTGCTGCCCACGAAGTCTTGCGCCATGTTGACAATTGTACCGTAGATACTTGCCTCACC 53571 Query 60289 GTGATGATATCCAGAATGTTCTGAAACATATCCACTGAATTGTGCGACTTTAATTTC 60345 |||||| || | ||||| || || || ||||| | | ||| ||||| || ||||| Sbjct 53572 GTGATGGTAAGCCGAATGCTCCGAGACGTATCCTCCAAGTTGGGCGACCTTGATTTC 53628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471797931457491