Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq294 221 1e-51 seq549 174 2e-37 seq798 116 5e-20 seq806 102 1e-15 seq702 100 3e-15 seq393 98.7 1e-14 seq437 86.0 8e-11 >seq294 Length=213801 Score = 221 bits (244), Expect = 1e-51 Identities = 331/464 (71%), Gaps = 6/464 (1%) Strand=Plus/Plus Query 1573779 CCGTGGATCGAAAAGTATCGCCCTATGGTGCTCGACGACATTGTCGGCAACGAGC-ACGC 1573837 |||||| | || ||||| || || | ||||| ||| | || |||||| ||| || | Sbjct 20427 CCGTGGGTGGAGAAGTACCGTCCGCAGACGCTCGCCGATGTCGTGGGCAAC-AGCGACAC 20485 Query 1573838 CGTCGCCTATCTCAGAGCGCTGGCTGCCGACGGCGACATGCCCAACCTCTTGCTGGCGGG 1573897 | ||| || || | || |||| ||||||| ||||| |||||||| | | |||| Sbjct 20486 CATCGACTCGCTGCGGGCCATGGCGCGCGACGGCAACATGACCAACCTCATCATCTCGGG 20545 Query 1573898 TCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGTCTGGCGCGTGTCCTCTTGGGCGC 1573957 ||||| |||||||||||||||||| |||| ||||| || || | | | ||| | Sbjct 20546 CCCGCCAGGCACGGGCAAGACCACGTCCATCCTCTGTCTCGCCCGCGAGTTGCTCGGCAC 20605 Query 1573958 GGCCGCCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGACGTCGT 1574017 | | | |||| |||||||| |||||||| || ||||| |||||| ||||| || Sbjct 20606 GAGCATGAAGCAGGCAGTGCTCGAGCTCAACGCCTCCGACGACCGCGGCATCGACACGGT 20665 Query 1574018 GCGCAAGATCATCAAGCACCACGC-CTCCAAGAGGATCGAC-CTGCCGCCCGGACGCCAC 1574075 ||||| | |||||| ||| | ||| ||| ||| ||||| || |||||||| Sbjct 20666 GCGCACCAAGATCAAGATGTTCGCGCAGCAAAAGGT--GACGCTGCCCCCTGGACGCCAT 20723 Query 1574076 AAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGGCCCTGCGG 1574135 ||| | | ||||||||||| || ||| || | ||| |||||||||||||||| ||||| Sbjct 20724 AAGATCGTGATCCTCGACGAAGCTGACAGCATGACGGCGGCGGCCCAGCAGGCGCTGCGT 20783 Query 1574136 TCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACACGTCGTCG 1574195 || ||||| | | | ||| ||||| || || |||||||| |||| ||| | Sbjct 20784 CGGACGATGGAGATCTTCTCGTCCACCACGCGGTTCGCGCTGGCGTGTAACAACTCGACC 20843 Query 1574196 ATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCGCTT 1574239 | | |||||||| | |||| |||||||||||||| ||||||| Sbjct 20844 AAGATCATCGAGCCGATCCAGAGTCGCTGCGCCATCTTGCGCTT 20887 >seq549 Length=149600 Score = 174 bits (192), Expect = 2e-37 Identities = 229/314 (73%), Gaps = 4/314 (1%) Strand=Plus/Minus Query 868690 CGCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGAT 868749 |||||||| ||| || || || ||| |||||| |||||||||||||||| ||||||||| Sbjct 88496 CGCCTTGGAGTATTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGAT 88437 Query 868750 CAACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGC 868809 || |||||||| || ||||||| || |||||| ||| | || || | Sbjct 88436 CATATCCATCCAGTCAAATGGGTTGGACGCGTTGTAGATCTTCGAGACACCAAGAGCGTG 88377 Query 868810 GAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGAT 868869 ||| || || || ||||| ||||||||||||||||||||||| | | |||||| ||||| Sbjct 88376 GAGAAGACGATCAGCGACGAACTCGATGTACTGGCACATGAGCGCCGAGTTCATACCGAT 88317 Query 868870 GAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGAT 868929 ||| | || || ||||| || | || ||||| ||||||||| |||||| || || Sbjct 88316 AAGCTCGACTGGGAGCGAGTCCTTGACGAACTCCTTCTCGATCGTGACGGCATCACTGAC 88257 Query 868930 GATCTGCCTGG--GCACGTCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAG 868987 |||| | ||| | || | | | | | ||| || ||| | ||||||||| |||| Sbjct 88256 AATCT-CGTGGATTCGCGAC-TCTGGGAGACGGTTAACAAGCTTGTTGTAGAGCAAGCAG 88199 Query 868988 GCAAAGTCGCAGTG 869001 || ||||| ||||| Sbjct 88198 GCGAAGTCACAGTG 88185 Score = 154 bits (170), Expect = 2e-31 Identities = 224/314 (71%), Gaps = 2/314 (1%) Strand=Plus/Minus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 |||||||||||||||| ||||| |||||||||||||| ||| | | || | ||| | Sbjct 87900 CCGAGTGGATGTTCTCAATGGCAATCTGGAAGCCGTAGAAGCAGCGGGCTTCAGGCACCT 87841 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 |||| || || |||| ||| ||||||||| ||| || || || ||||| |||| Sbjct 87840 GGACTTCGTTGCTGAAGTTCATGGCAAGGTTCTCGTTCACAATACCATCACTGGCAGCGA 87781 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGA 869810 | || || || ||||||||||| ||||| ||||| | |||| | | ||||| Sbjct 87780 AGAACGCGAGCACGTGCTTGATGAAGTGACGCTCATTGTCGGTCAAGTTGCTCCAGTCCT 87721 Query 869811 CGGTGTCG-GCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 | |||| || | || || | ||||||| | ||||||| ||| || ||||| ||| Sbjct 87720 TGAGGTCGTGCAC-AAGATCGATCTCCTCGACCGTCCAGAAGCTGGCTTCCGCCTTCTTG 87662 Query 869870 TACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTCG 869929 ||||| ||||| | | || | |||| |||||||| || || ||||| ||||| ||| Sbjct 87661 TACATATCCCAGATCTCCTTCTCCTGGATCGGGAAGAGCACGAATCGGTTTGGGTTCTCG 87602 Query 869930 CGCAACAGGGGTTC 869943 || | ||| || || Sbjct 87601 CGAAGCAGAGGCTC 87588 Score = 141 bits (156), Expect = 1e-27 Identities = 199/279 (71%), Gaps = 3/279 (1%) Strand=Plus/Minus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 |||||| || |||||||| | ||||| ||| |||||| |||||||| || ||||| Sbjct 88181 ACCTTCATCACGACTGATAAGCTCGTTCGAGAAGCTGAGGCCAGGCATGAGACCACGCTT 88122 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||||||||| |||| | |||||| |||||||| ||||| ||||| | ||| || || Sbjct 88121 CTTGAGCCAGAAGACCGAGCAGAACGAACCCGAGAAGAAGATACCCTCAATGGCAGCGAA 88062 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358 | ||| || ||||| ||||| | || | ||| || ||| | |||||| Sbjct 88061 GGCGACGACACGCTCAGCAAACG---CGGCGTTCTCTGAGTCACACCAGCGGAGCGCCCA 88005 Query 869359 GTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTC 869418 || |||||| ||| ||| | || | || || |||||||| || | ||||| ||| || Sbjct 88004 GTTGGCCTTCTTCTGCACGCATGGGATTGTCTCAATGGCGCGGAACAAGTGGTTCTTCTC 87945 Query 869419 GGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATA 869457 ||| | ||||||| || ||||| |||| ||||| || Sbjct 87944 GGCGGCATCCTTGATGTACGTGTCAATCAACAGCGAGTA 87906 >seq798 Length=51265 Score = 116 bits (128), Expect = 5e-20 Identities = 251/369 (68%), Gaps = 6/369 (2%) Strand=Plus/Plus Query 18117 GGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCATGCCACTGGCCGAGGCCGACAT 18176 ||| ||||||||||| ||||||| |||||||||| ||| | || |||| | ||| | Sbjct 19055 GGGGGTCGGCTGCATTGTCGACGGTGTGCCGCCGTCGATGGCGTTGACCGAAGAAGACCT 19114 Query 18177 CCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTTTCCACGCCGCGCAACGA 18236 ||||| ||| | || || || || || ||| || ||| | |||||||| |||| Sbjct 19115 TCAGCCACAGCTCACGCGTCGTCGTCCAGGACAGAGCAAGCTTACGACGCCGCGTGACGA 19174 Query 18237 GCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTCACGCTCGGCTCGCCCGT 18296 | |||| ||||| ||| | ||||||||| |||| |||||||||| |||| || Sbjct 19175 GAAGGATCTCGTCACGATCATGAGCGGCACGGAGCGCGGCTTCACGCTCGGTACGCCTGT 19234 Query 18297 CGGCCTCTTTGTGGCCAACCGCG-ACCAGCGGCCCGTCGACTATTCCGACATGTGCAAGG 18355 | |||||||| ||||| | | || ||| || ||||| || ||| || | Sbjct 19235 GGCACTCTTTGT-GCCAAATGAGAACGTGCGTCCGCAGGACTACAAGGAAATGGGCGCCG 19293 Query 18356 TGCCGCGGCCCTCACACGCCGACTACACCTACATGGCCAAGTACGGCA-TCAAGGCGTC- 18413 |||| ||||| || || || ||||| ||| | |||||||||| | | || | Sbjct 19294 TGCCACGGCCAGGCCATGCGGATTACACGTACCAGATGAAGTACGGCACGCGTGCCGCCA 19353 Query 18414 GTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGCGGT 18473 || ||||| || || ||| ||| |||||||| | || || || || |||||| | Sbjct 19354 GT--GGCGGTGGTCGATCGAGTGCACGCGAGACGATTGGTCGTGTGGCGGCTGGCGCGAT 19411 Query 18474 CGCCGAGAA 18482 || || || Sbjct 19412 TGCTGAAAA 19420 Score = 107 bits (118), Expect = 2e-17 Identities = 102/129 (79%), Gaps = 1/129 (1%) Strand=Plus/Plus Query 19065 GTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGCCGTGCTTTGACAAGATC 19124 ||||| || ||| ||||| ||||||| ||||| ||||| || ||||| |||||| || Sbjct 19881 GTGACCTGTGTGATCCGCAATGTGCCGGTGGGCCTTGGCGAACCATGCTTCGACAAGCTC 19940 Query 19125 GAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGGGATTCGAGATTGGC 19184 ||||| | || || || |||||||| ||||| || ||||||||||| || ||||| ||| Sbjct 19941 CAGGCCACACTGGCGCATGCCATGCTCTCGATTCCAGCCACCAAGGGTTTTGAGATCGGC 20000 Query 19185 AGCGGGTTT 19193 ||||||| Sbjct 20001 -TCGGGTTT 20008 >seq806 Length=732016 Score = 102 bits (112), Expect = 1e-15 Identities = 113/147 (77%), Gaps = 8/147 (5%) Strand=Plus/Minus Query 1592150 GACGTCGAGCAGCCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAG 1592209 |||||||||||| ||||||||| | |||||||| ||||||||| | || |||||| Sbjct 682741 GACGTCGAGCAGGATTTGCTCTTTGAGCTCATCCTCGCGGCCAACTACATGGATATCAAG 682682 Query 1592210 CCTCTGCTCGATCTTGG---GTGC-AAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCC 1592265 |||| | || ||||| |||| ||| ||||||| ||||||||||||||| |||| Sbjct 682681 AGTCTGTTGGA-CTTGGCGTGTGCCAAG---GTGGCCAGTATGATCAAGGGCAAGACGCC 682626 Query 1592266 CGAGGAGATCCGCAAGACCTTTAACAT 1592292 ||||||| || |||| || ||||| Sbjct 682625 GCAGGAGATTCGTGAGACGTTCAACAT 682599 >seq702 Length=166584 Score = 100 bits (110), Expect = 3e-15 Identities = 156/220 (71%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGT-GCCG 1254401 || |||||| || || | | || || ||||||||||||||||| ||||| | | | Sbjct 111190 GCTTGGCCAACTCACCAGGGAGCATGAGACGCACGGCGGTCTGGATTTCGCGGGACGACA 111249 Query 1254402 A--TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGA 1254459 | ||| || |||||| | ||| || ||||||||| | | | ||||| |||| Sbjct 111250 AGGTCGACTT---CTTGTTGTAACGCGAGAGCTTGCCGGCCTCCGAGGCAATGCGCTCGA 111306 Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGG 1254519 |||||||||| ||||||||||||| |||||| |||||||| || || | Sbjct 111307 AAATGTCGTTGATGAACGAGTTCATGATCGACATACCGCGCTTGGAGATACCGGTCTCCG 111366 Query 1254520 GGTGCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 |||||||||| | ||||||||||||| | | |||||| Sbjct 111367 GGTGCACCTGACGCAACACCTTGTAGATGTAGGTCGAGTA 111406 Score = 96.9 bits (106), Expect = 4e-14 Identities = 155/220 (70%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGT-GCCG 1254401 || |||||| || || | | || || ||||| ||||||||||| ||||| | | | Sbjct 3568 GCTTGGCCAACTCACCAGGGAGCATGAGACGCACAGCGGTCTGGATTTCGCGGGACGACA 3627 Query 1254402 A--TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGA 1254459 | ||| || |||||| | ||| || ||||||||| | | | ||||| |||| Sbjct 3628 AGGTCGACTT---CTTGTTGTAACGCGAGAGCTTGCCGGCCTCCGAGGCAATGCGCTCGA 3684 Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGG 1254519 |||||||||| ||||||||||||| |||||| |||||||| || || | Sbjct 3685 AAATGTCGTTGATGAACGAGTTCATGATCGACATACCGCGCTTGGAGATACCGGTCTCAG 3744 Query 1254520 GGTGCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 |||||||||| | ||||||||||||| | | |||||| Sbjct 3745 GGTGCACCTGACGCAACACCTTGTAGATGTAGGTCGAGTA 3784 >seq393 Length=25462 Score = 98.7 bits (108), Expect = 1e-14 Identities = 128/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 92616 GTGAGGGCCTCCTGCACCTGGAAGCGGTCGGAAAACATGTCGACGATGCGCGGGATCTTG 92675 || ||| |||||| || || || || ||||||| || |||||||| || |||| Sbjct 16374 GTCAGGCGCTCCTGTACTTGCAATCGACGCGAAAACACCTCCGAGATGCGCGCGAGCTTG 16433 Query 92676 CTCAGGCCGATGATCCTGCCCGTGGGCAGGTAGCCCACGTGGGCCTTGCCCATAAAGGGC 92735 |||| || | | |||| | || | ||| || | ||| |||||||| | |||||| Sbjct 16434 CTCAAACCCAGCACTTTGCCGTTTGGAATGTACCCAATGTGCACCTTGCCCGTGAAGGGC 16493 Query 92736 AGCAGATGGTGCTCGCACATGGAGAAAAAGTCGACGTCGCGCACGATCACCATCTCG 92792 | || || ||||||||||||||| | | ||| | |||||||||||| ||||| ||| Sbjct 16494 ACCATGTGATGCTCGCACATGGAGTAGAGGTCAATGTCGCGCACGATGACCATTTCG 16550 >seq437 Length=32142 Score = 86.0 bits (94), Expect = 8e-11 Identities = 298/448 (67%), Gaps = 24/448 (5%) Strand=Plus/Plus Query 96653 TGCCGAGAACCTCATGATCGTCGACCTGGTGCGCAACGAC-CTGAGCGTGTGCTGCGC-G 96710 ||| ||||| | ||||||| ||||| |||||||||||| || || ||| |||| | Sbjct 12939 TGCAGAGAATATGATGATCGCAGACCTCGTGCGCAACGACTTTGGCCGAGTG--GCGCAG 12996 Query 96711 CCCGGCAGCGTCGTCGTGCCGCCCGGCCGCCTGATGGCGATTGAGACCTACGCCGCCGTG 96770 |||||| ||| |||||| | || ||| | |||| |||||| ||||| Sbjct 12997 ATCGGCAGTGTCCACGTGCC------CAAACTCATGAGTGTGGAGAGCTACGCGACCGTG 13050 Query 96771 CACCAGATGGTGACCACCGT-CGA-CGGCCTGCTCGACCGCGGCCGGACGGCGCTCGACC 96828 || ||| | ||||| ||||| ||| || | ||||| | | ||| |||| || | ||| Sbjct 13051 CATCAGCTCGTGACGACCGTGCGAGCGCTCCGCTCGCCTGAAGCC-GACGTCG-TGGACG 13108 Query 96829 T-CGTGCGCGCGGCCTTTCCGCCGGGCTCGATGACGGGCGCGCCCAAGGCGCGCAGCATG 96887 | | || | ||| | || || || || ||||| ||||| || || ||||| ||| Sbjct 13109 TGCTTGAG-GCGACGTTCCCTGGTGGTTCCATGACCGGCGCACCTAAAAAGCGCACGATG 13167 Query 96888 GAGATTCTCGATCGCCTCGAGAAGCACCGCCCGCGCGGGATCTACTCGGGCGCGCTGGGC 96947 || | | || |||| ||| || || ||||| | ||||| |||||| |||| Sbjct 13168 CAGCTCATTCGTCAGCTCG---AGCGCCATCCACGCGGTGTGTACTCAGGCGCGTTGGGT 13224 Query 96948 tttttttCGGCCGACGGCGCCTGCAGCCTGTCGGTGGTGATCCGCACGGCCGTCATCGAC 97007 || | |||| ||||||| ||| || | | ||||||||||| || ||| || Sbjct 13225 TTCCTCTCGGTCGACGGCAGTTGCGATCTCAACATCATCATCCGCACGGCTGTGATC-AC 13283 Query 97008 GCGGA-CGGCTCGGCGTCGGTGGGCTGCGGCGGCGCCATCGTCGCCGACTCGGACCCCGA 97066 || | | | | ||| |||||| || || |||||||| || ||| |||| || Sbjct 13284 -CGAATCAAGT--GTGTCTCTGGGCTCGGGTGGTGCCATCGTTGCACTCTCAGACCAGGA 13340 Query 97067 CGCCGAGTTTGCCGAGATTGTGCTCAAG 97094 || |||| | ||||| |||||||| Sbjct 13341 CGAAGAGTACGATGAGATGCTGCTCAAG 13368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107053606535631